Publications
Our Lab GitHub page connects publications with the relevant repositories: https://github.com/Lejeune-Lab
For a complete list of publications that includes papers on the arXiv, please see Google Scholar
Journal Articles
Yuan, L., Park, H. S., & Lejeune, E. (2022). Towards out of distribution generalization for problems in mechanics. Computer Methods in Applied Mechanics and Engineering, 400, 115569.
Das, S. L., Sutherland, B. P., Lejeune, E., Eyckmans, J., & Chen, C. S. (2022). Mechanical response of cardiac microtissues to acute localized injury. American Journal of Physiology-Heart and Circulatory Physiology.
Lohr, M. J., Sugerman, G. P., Kakaletsis, S., Lejeune, E., & Rausch, M. K. (2022). An introduction to the Ogden model in biomechanics: benefits, implementation tools and limitations. Philosophical Transactions of the Royal Society A, 380(2234), 20210365.
Prachaseree, P., & Lejeune, E. (2022). Learning Mechanically Driven Emergent Behavior with Message Passing Neural Networks. Computers & Structures, 270, 106825.
Kobeissi, H., Mohammadzadeh, S., & Lejeune, E. (2022). Enhancing Mechanical Metamodels with a Generative Model-Based Augmented Training Dataset. Journal of Biomechanical Engineering.
Mohammadzadeh, S., & Lejeune, E. (2021). Predicting mechanically driven full-field Quantities of Interest with deep learning-based metamodels. Extreme Mechanics Letters, 101566.
Zhao B., Zhang K., Chen C.S., & Lejeune E. (2021) Sarc-Graph: Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes. PLoS Comput Biol 17(10): e1009443.
Das, S. L., Bose, P., Lejeune, E., Reich, D. H., Chen, C., & Eyckmans, J. (2021). Extracellular Matrix Alignment Directs Provisional Matrix Assembly and Three Dimensional Fibrous Tissue Closure. Tissue Engineering Part A.
Khang, A., Lejeune, E., Abbaspour, A., Howsmon, D. P., & Sacks, M. S. (2021). On the Three-Dimensional Correlation Between Myofibroblast Shape and Contraction. Journal of Biomechanical Engineering, 143(9), 094503.
Lejeune, E., & Zhao, B. (2021). Exploring the potential of transfer learning for metamodels of heterogeneous material deformation. Journal of the Mechanical Behavior of Biomedical Materials, 104276.
Lejeune, E. (2021). Geometric stability classification: datasets, metamodels, and adversarial attacks. Computer-Aided Design, 131, 102948.
Kakaletsis, S., Meador, W. D., Mathur, M., Sugerman, G. P., Jazwiec, T., Malinowski, M., Lejeune, E., Timek, T.A., & Rausch, M. K. (2020). Right Ventricular Myocardial Mechanics: Multi-Modal Deformation, Microstructure, Modeling, and Comparison to the Left Ventricle. Acta Biomaterialia.
Lejeune, E. (2020). Mechanical MNIST: A benchmark dataset for mechanical metamodels. Extreme Mechanics Letters, 100659.
Lejeune, E., Khang, A., Sansom, J., & Sacks, M. S. (2020). FM-Track: A fiducial marker tracking software for studying cell mechanics in a three-dimensional environment. SoftwareX, 11, 100417.
Lejeune, E., & Linder, C. (2020). Interpreting stochastic agent-based models of cell death. Computer Methods in Applied Mechanics and Engineering, 360, 112700.
Lejeune, E., & Sacks, M. S. (2019). Analyzing valve interstitial cell mechanics and geometry with spatial statistics. Journal of biomechanics, 93, 159-166.
Khang, A., Rodriguez, A. G., Schroeder, M. E., Sansom, J., Lejeune, E., Anseth, K. S., & Sacks, M. S. (2019). Quantifying Heart Valve Interstitial Cell Contractile State Using Highly Tunable Poly (Ethylene Glycol) Hydrogels. Available at SSRN 3387706.
Lejeune, E., Dortdivanlioglu, B., Kuhl, E., & Linder, C. (2019). Understanding the mechanical link between oriented cell division and cerebellar morphogenesis. Soft matter, 15(10), 2204-2215.
Lejeune, E., & Linder, C. (2018). Understanding the relationship between cell death and tissue shrinkage via a stochastic agent-based model. Journal of biomechanics, 73, 9-17.
Lejeune, E., & Linder, C. (2018). Modeling mechanical inhomogeneities in small populations of proliferating monolayers and spheroids. Biomechanics and modeling in mechanobiology, 17(3), 727-743.
Lejeune, E., & Linder, C. (2017). Quantifying the relationship between cell division angle and morphogenesis through computational modeling. Journal of theoretical biology, 418, 1-7.
Lejeune, E., & Linder, C. (2017). Modeling tumor growth with peridynamics. Biomechanics and modeling in mechanobiology, 16(4), 1141-1157.
Lejeune, E., Javili, A., Weickenmeier, J., Kuhl, E., & Linder, C. (2016). Tri-layer wrinkling as a mechanism for anchoring center initiation in the developing cerebellum. Soft Matter, 12(25), 5613-5620.
Lejeune, E., Javili, A., & Linder, C. (2016). An algorithmic approach to multi-layer wrinkling. Extreme Mechanics Letters, 7, 10-17.
Lejeune, E., Javili, A., & Linder, C. (2016). Understanding geometric instabilities in thin films via a multi-layer model. Soft Matter, 12(3), 806-816.
Rivera, J. P., Josipovic, G., Lejeune, E., Luna, B. N., & Whittaker, A. S. (2015). Automated Detection and Measurement of Cracks in Reinforced Concrete Components. ACI Structural Journal, 112(3).
Book Chapters
Khang, A., Howsmon, D. P., Lejeune, E., & Sacks, M. S. (2020). Multi-scale Modeling of the Heart Valve Interstitial Cell. In Multi-scale Extracellular Matrix Mechanics and Mechanobiology (pp. 21-53). Springer, Cham.
Lejeune, Emma, and Christian Linder (2021). Modeling biological materials with peridynamics. In Peridynamic Modeling, Numerical Techniques, and Applications (pp. 249-273). Elsevier.