Data & Code
Astrangia poculata Transcriptome
Assembled and annotated transcriptome for aposymbiotic adult Astrangia poculata . Data were generated using Illumina HiSeq2500 1*50bp reads and assembled using Trinity.
Transcriptome will be published in Wuitchik et al., in press. Stay tuned!
Breviolum psygmophilum Transcriptome
Oculina arbuscula Transcriptome
Oculina arbuscula Sequence Stats
57470 sequences.
1418 average length.
32901 maximum length.
500 minimum length.
N50 = 1678
81.5 Mb altogether (81494647 bp).
0 ambiguous Mb. (0 bp, 0%)
0 Mb of Ns. (0 bp, 0%)
Breviolum psygmophilum Sequence Stats
31970 sequences.
1291 average length.
8436 maximum length.
500 minimum length.
N50 = 1458
41.3 Mb altogether (41260850 bp).
0 ambiguous Mb. (0 bp, 0%)
0 Mb of Ns. (0 bp, 0%)
Assembled and annotated transcriptomes Oculina arbuscula and its symbiotic dinoflagellate algae Breviolum psygmophilum. Sequencing was performed by NovoGene on two lanes of an Illumina Novaseq 6000 sequencer as 150bp paired-end reads. Pipeline for generating transcriptomes.
Transcriptomes will be published in Rivera et al., in prep. Stay tuned!
Siderastrea siderea Transcriptome
Assembled and annotated transcriptome for the adult scleractinian coral Siderastrea siderea with symbiont contamination removed. Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.
Please cite: Davies et al 2016
Cladocopium Transcriptome
Assembled and annotated transcriptome for the symbiotic dinoflagellate algae Cladocopium hosted by Siderastrea siderea with all host contamination removed. Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.
Please cite: Davies et al 2018
Crepidula fornicata previously published transcriptome and new annotation files
Annotated transcriptome (gene and GO) for the Common Slipper Shell snail Crepidula fornicata. Previously published 454 transcriptome was retrieved from the Henry Lab, trimmed to include only contigs >500bp and annotated via GitHub.
Please cite: Kriefall et al 2018
Crepidula fornicata 2019 assembled transcriptome and annotation files
Annotated transcriptome (gene and GO) for the Common Slipper Shell snail Crepidula fornicata assembled from data from Reyes et al in press (2021).
Please cite: Reyes CL, Benson BE, Levy M, Pires A, Pechenik JA and SW Davies. In press. The Marine Gastropod Crepidula fornicata Remains Resilient to Ocean Acidification Across Two Life History Stages. Frontiers in Physiology biorxiv
Clownfish transcriptome
Assembled and annotated transcriptome for the the clownfish Amphiprion percula (Nemo). Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.
Please cite: https://www.frontiersin.org/articles/10.3389/fmars.2018.00284/full