Publications
Books
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If you love physics, fascinated with the brain, and wish that neural circuits could be understood from first principles, this book is for you! Gaute Einevoll and his team put together a masterpiece educational resource. Depending on the background and stage of training, the reader can consume it front to back, or use it as a reference book. The first part covers, in detail, the biophysical theory governing generation of the transmembrane and extracellular electrical potential. The second part is a comprehensive guide to simulations of these signals with the focus on data-driven modeling, from the microscopic level of single neurons and neural networks to macroscopic signals observable with noninvasive electro- and magnetoencephalography. This didactic organization, depth of coverage, and impeccable expertise of the authors, make this book a top candidate as a textbook for computational neuroscience courses. Supplementary simulation software, freely available on GitHub, is a fantastic addition for research and teaching.
Coming Up
Out-of-focus signal rejection for in vivo pO2 measurements using two-photon phosphorescence lifetime microscopy. |
Multi-modal microvascular cerebral blood flow mapping with 14T single-vessel MRI and optical microscopy in the mouse brain. |
Visual stimulation drives retinotopic acetylcholine release in the mouse visual cortex. |
| bioRxiv [Preprint]. 2024 Feb 4:2024.02.04.578821. |
High-resolution awake mouse fMRI at 14 Tesla. |
| bioRxiv [Preprint]. 2023 Dec 9:2023.12.08.570803. |
Imaging though Windansee electrode arrays reveals a small minority of local neurons following surface multiunit activity. |
| bioRxiv [Preprint]. 2022.09.01.506113 |
Published Articles
Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination. |
| Doran PR, Fomin-Thunemann N, Tang RP, Balog D, Zimmerman B, Kılıç K, Martin EA, Kura S, Fisher HP, Chabbott G, Herbert J, Rauscher BC, Jiang JX, Sakadzic S, Boas DA, Devor A, Chen IA, Thunemann M. Neurophotonics. 2024 Jul;11(3):034310. |
Special Section Guest Editorial: Frontiers in Neurophotonics. |
| De Koninck Y, De Koninck P, Devor A, Lavoie-Cardinal F. Neurophotonics. 2024 Jan;11(1):014401. |
Understanding the nervous system: lessons from Frontiers in Neurophotonics. |
| De Koninck Y, Alonso J, Bancelin S, Béïque JC, Bélanger E, Bouchard C, Canossa M, Chaniot J, Choquet D, Crochetière MÈ, Cui N, Danglot L, De Koninck P, Devor A, Ducros M, Getz AM, Haouat M, Hernández IC, Jowett N, Keramidis I, Larivière-Loiselle C, Lavoie-Cardinal F, MacGillavry HD, Malkoç A, Mancinelli M, Marquet P, Minderler S, Moreaud M, Nägerl UV, Papanikolopoulou K, Paquet ME, Pavesi L, Perrais D, Sansonetti R, Thunemann M, Vignoli B, Yau J, Zaccaria C. Neurophotonics. 2024 Jan;11(1):014415. |
The Ten Commandments of Everyday Leadership. |
| Devor A, Dayeh S. Neurophotonics. 2023 Oct;10(4):040101. |
Tissue Oxygen Depth Explorer: an interactive database for microscopic oxygen imaging data. |
| Amra LN, Mächler P, Fomin-Thunemann N, Kılıç K, Saisan P, Devor A, Thunemann M. Front Neuroinform. 2023 Nov 27;17:1278787. |
Measurements of slow tissue dynamics with short-separation speckle contrast optical spectroscopy. |
| Liu B, Shah S, Küreli G, Devor A, Boas DA, Cheng X. Biomed Opt Express. 2023 Aug 21;14(9):4790-4799. |
A lone spike in blood glucose can enhance the thrombo-inflammatory response in cortical venules. |
| Shaked I, Foo C, Mächler P, Liu R, Cui Y, Ji X, Broggini T, Kaminski T, Suryakant Jadhav S, Sundd P, Firer M, Devor A, Friedman B, Kleinfeld D. J Cereb Blood Flow Metab. 2024 Feb;44(2):252-271. |
Time-Lagged Functional Ultrasound for Multi-Parametric Cerebral Hemodynamic Imaging. |
| Liu B, Wang Y, Fomin-Thunemann N, Thunemann M, Kilic K, Devor A, Cheng X, Tan J, Jiang J, Boas DA, Tang J. IEEE Trans Med Imaging. 2024 Feb;43(2):638-648. |
The stop and go of glymphatic flow. |
| Kılıç K, Devor A. Nat Neurosci. 2023 Jun;26(6):924-925. |
Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll. |
| Devor A. Neurophotonics. 2023 Jan;10(1):010103. |
Aerobic exercise reverses aging-induced depth-dependent decline in cerebral microcirculation. |
| Shin P, Pian Q, Ishikawa H, Hamanaka G, Mandeville ET, Shuzhen G, Buyin F, Alfadhel M, Allu SR, Şencan-Eğilmez I, Li B, Ran C, Vinogradov SA, Ayata C, Lo EH, Arai K, Devor A, Sakadžić S. Elife. 2023 Jul 04;12:e86329. |
Impaired dynamics of precapillary sphincters and pericytes at first-order capillaries predict reduced neurovascular function in the aging mouse brain. |
| Changsi Cai, Stefan Andreas Zambach, Søren Grubb, Lechan Tao, Chen He, Barbara Lykke Lind, Kirsten Joan Thomsen, Xiao Zhang, Bjørn Olav Hald, Reena Murmu Nielsen, Kayeon Kim, Anna Devor, Micael Lønstrup & Martin Johannes Lauritzen. Nat Aging 2023 Jan 26;3:173–184. |
Changes in neurovascular function in brain microvessels during aging. |
Multimodal monitoring of human cortical organoids implanted in mice reveal functional connection with visual cortex. |
| Wilson MN†, Thunemann M†, Liu X, Lu Y, Puppo F, Adams JW, Kim JH, Ramezani M, Pizzo DP, Djurovic S, Andreassen OA, Mansour AA, Gage FH, Muotri AR, Devor A*, Kuzum D*. Nat Commun. 2022 Dec 26;13(1):7945. |
Baseline oxygen consumption decreases with cortical depth. |
| Mächler P†, Fomin-Thunemann N†, Thunemann M, Sætra MJ, Desjardins M, Kılıç K, Amra LN, Martin EA, Chen IA, Şencan-Eğilmez I, Li B, Saisan P, Jiang JX, Cheng Q, Weldy KL, Boas DA, Buxton RB, Einevoll GT, Dale AM, Sakadžić S, Devor A. PLoS Biol. 2022 Oct 27;20(10):e3001440. |
Neurovascular coupling is preserved in chronic stroke recovery after targeted photothrombosis. |
| Smrithi Sunil, John Jiang, Shashwat Shah, Sreekanth Kura, Kivilcim Kilic, Sefik Evren Erdener, Cenk Ayata, Anna Devor, David Boas. NeuroImage: Clinical. In press. |
Optical imaging and spectroscopy for the study of the human brain: status report. |
| Ayaz H, Baker WB, Blaney G, Boas DA, Bortfeld H, Brady K, Brake J, Brigadoi S, Buckley EM, Carp SA, Cooper RJ, Cowdrick KR, Culver JP, Dan I, Dehghani H, Devor A, Durduran T, Eggebrecht AT, Emberson LL, Fang Q, Fantini S, Franceschini MA, Fischer JB, Gervain J, Hirsch J, Hong KS, Horstmeyer R, Kainerstorfer JM, Ko TS, Licht DJ, Liebert A, Luke R, Lynch JM, Mesquida J, Mesquita RC, Naseer N, Novi SL, Orihuela-Espina F, O’Sullivan TD, Peterka DS, Pifferi A, Pollonini L, Sassaroli A, Sato JR, Scholkmann F, Spinelli L, Srinivasan VJ, St Lawrence K, Tachtsidis I, Tong Y, Torricelli A, Urner T, Wabnitz H, Wolf M, Wolf U, Xu S, Yang C, Yodh AG, Yücel MA, Zhou W. Neurophotonics. 2022 Aug;9(Suppl 2):S24001. |
Scalable thousand channel penetrating microneedle arrays on flex for multimodal and large area coverage brain-machine interfaces. |
| Sang Heon Lee, Martin Thunemann, Keundong Lee, Daniel R. Cleary, Karen J. Tonsfeldt, Hongseok Oh, Farid Azzazy, Youngbin Tchoe, Andrew M. Bourhis, Lorraine Hossain, Yun Goo Ro, Atsunori Tanaka, Kıvılcım Kılıç, Anna Devor, Shadi A. Dayeh. Adv. Funct. Mater.2022, 32, 2112045. |
Editorial: Neurophotonics in Kyiv, Ukraine. |
| Anna Devor. Neurophotonics. 2022 Apr;9(2):020101. |
Neurophotonic tools for microscopic measurements and manipulation: status report. |
| Ahmed S Abdelfattah, Sapna Ahuja, Taner Akkin, Srinivasa Rao Allu, Joshua Brake, David A Boas, Erin M Buckley, Robert E Campbell, Anderson I Chen, Xiaojun Cheng, Tomáš Čižmár, Irene Costantini, Massimo De Vittorio, Anna Devor, Patrick R Doran, Mirna El Khatib, Valentina Emiliani, Natalie Fomin-Thunemann, Yeshaiahu Fainman, Tomas Fernandez-Alfonso, Christopher G L Ferri, Ariel Gilad, Xue Han, Andrew Harris, Elizabeth M C Hillman, Ute Hochgeschwender, Matthew G Holt, Na Ji, Kıvılcım Kılıç, Evelyn M R Lake, Lei Li, Tianqi Li, Philipp Mächler, Evan W Miller, Rickson C Mesquita, K M Naga Srinivas Nadella, U Valentin Nägerl, Yusuke Nasu, Axel Nimmerjahn, Petra Ondráčková, Francesco S Pavone, Citlali Perez Campos, Darcy S Peterka, Filippo Pisano, Ferruccio Pisanello, Francesca Puppo, Bernardo L Sabatini, Sanaz Sadegh, Sava Sakadzic, Shy Shoham, Sanaya N Shroff, R Angus Silver, Ruth R Sims, Spencer L Smith, Vivek J Srinivasan, Martin Thunemann, Lei Tian, Lin Tian, Thomas Troxler, Antoine Valera, Alipasha Vaziri, Sergei A Vinogradov, Flavia Vitale, Lihong V Wang, Hana Uhlířová, Chris Xu, Changhuei Yang, Mu-Han Yang, Gary Yellen, Ofer Yizhar, Yongxin Zhao. Neurophotonics. 2022 Jan;9(Suppl 1):013001. |
Mind, brain, body, and neuroethics: a conversation with Karen Rommelfanger. |
| Anna Devor. Neurophotonics 2022 Jan; 9(1): 010101. |
Upcoming Neurophotonics Status Report. |
| Anna Devor. Neurophotonics 2021 Oct;8(4):040101. |
Microscale Physiological Events on the Human Cortical Surface. |
| Angelique C Paulk, Jimmy C Yang, Daniel R Cleary, Daniel J Soper, Milan Halgren, Alexandra R O’Donnell, Sang Heon Lee, Mehran Ganji, Yun Goo Ro, Hongseok Oh, Lorraine Hossain, Jihwan Lee, Youngbin Tchoe, Nicholas Rogers, Kivilcim Kiliç, Sang Baek Ryu, Seung Woo Lee, John Hermiz, Vikash Gilja, István Ulbert, Daniel Fabó, Thomas Thesen, Werner K Doyle, Orrin Devinsky, Joseph R Madsen, Donald L Schomer, Emad N Eskandar, Jong Woo Lee, Douglas Maus, Anna Devor, Shelley I Fried, Pamela S Jones, Brian V Nahed, Sharona Ben-Haim, Sarah K Bick, Robert Mark Richardson, Ahmed M Raslan, Dominic A Siler, Daniel P Cahill, Ziv M Williams, G Rees Cosgrove, Shadi A Dayeh, Sydney S Cash. Cereb Cortex. 2021 Jul 5;31(8):3678-3700. |
Ediorial: Diversity is our Strength. |
| Anna Devor. Neurophotonics. 2021 Jul;8(3):030101. |
A Suite of Neurophotonic Tools to Underpin the Contribution of Internal Brain States in fMRI. |
| Philipp Mächler, Thomas Broggini, Celine Mateo, Martin Thunemann, Natalie Fomin-Thunemann, Patrick R Doran, Ikbal Sencan, Kivilcim Kilic, Michèle Desjardins, Hana Uhlirova, Mohammad A Yaseen, David A Boas, Andreas A Linninger, Massimo Vergassola, Xin Yu, Laura D Lewis, Jonathan R Polimeni, Bruce R Rosen, Sava Sakadžić, Richard B Buxton, Martin Lauritzen, David Kleinfeld, Anna Devor. Curr Opin Biomed Eng. 2021 Jun;18:100273. |
All-Optical Electrophysiology in hiPSC-Derived Neurons With Synthetic Voltage Sensors. |
| Francesca Puppo, Sanaz Sadegh, Cleber A Trujillo, Martin Thunemann, Evan P Campbell, Matthieu Vandenberghe, Xiwei Shan, Ibrahim A Akkouh, Evan W Miller, Brenda L Bloodgood, Gabriel A Silva, Anders M Dale, Gaute T Einevoll, Srdjan Djurovic, Ole A Andreassen, Alysson R Muotri, Anna Devor. Front Cell Neurosci. 2021 May 28;15:671549. |
Ediorial: Welcome New Members of the Neurophotonics Editorial Board! |
| Anna Devor. Neurophotonics. 2021 Apr;8(2):020101. |
Imaging localized fast optical signals of neural activation with optical coherence tomography in awake mice. |
| Jianbo Tang, Xiaojun Cheng, Kivilcim Kilic, Anna Devor, Jonghwan Lee, David A Boas. Opt Lett. 2021 Apr 1;46(7):1744-1747. |
Chronic Cranial Windows for Long Term Multimodal Neurovascular Imaging in Mice. |
| Kıvılcım Kılıç, Michèle Desjardins, Jianbo Tang, Martin Thunemann, Smrithi Sunil, Şefik Evren Erdener, Dmitry D Postnov, David A Boas, Anna Devor. Front Physiol. 2021 Jan 22;11:612678. |
Editorial: Neurophotonics for you. |
| Anna Devor. Neurophotonics. 2021 Jan;8(1):010101. |
Impact of Brain Surface Boundary Conditions on Electrophysiology and Implications for Electrocorticography. |
| Nicholas Rogers, Martin Thunemann, Anna Devor, Vikash Gilja. Front Neurosci. 2020 Aug 7;14:763. |
Spatially resolved estimation of metabolic oxygen consumption from optical measurements in cortex. |
| Marte J Sætra, Andreas V Solbrå, Anna Devor, Sava Sakadžić, Anders M Dale, Gaute T Einevoll. Neurophotonics. 2020 Jul;7(3):035005. |
Understanding the genetic determinants of the brain with MOSTest. |
| Dennis van der Meer, Oleksandr Frei, Tobias Kaufmann, Alexey A Shadrin, Anna Devor, Olav B Smeland, Wesley K Thompson, Chun Chieh Fan, Dominic Holland, Lars T Westlye, Ole A Andreassen, Anders M Dale. J Cereb Blood Flow Metab. 2020 Jun 9;271678X20928011. |
Optical measurement of microvascular oxygenation and blood flow responses in awake mouse cortex during functional activation. |
| İkbal Şencan, Tatiana Esipova, Kıvılcım Kılıç, Baoqiang Li, Michèle Desjardins, Mohammad A Yaseen, Hui Wang, Jason E Porter, Sreekanth Kura, Buyin Fu, Timothy W Secomb, David A Boas, Sergei A Vinogradov, Anna Devor, Sava Sakadžić. J Cereb Blood Flow Metab. 2020 Jun 9;271678X20928011. |
Secondary effects on brain physiology caused by focused ultrasound-mediated disruption of the blood-brain barrier. |
| Nick Todd, Cleide Angolano, Christiane Ferran, Anna Devor, David Borsook, Nathan McDannold. J Control Release. 2020 Aug 10;324:450-459. |
Comparing the fundamental imaging depth limit of two-photon, three-photon, and non-degenerate two-photon microscopy. |
| Xiaojun Cheng, Sanaz Sadegh, Sharvari Zilpelwar, Anna Devor, Lei Tian, David A Boas. Opt Lett. 2020 May 15;45(10):2934-2937. |
Efficient non-degenerate two-photon excitation for fluorescence microscopy. |
| Sadegh S, Yang MH, Ferri CGL, Thunemann M, Saisan PA, Wei Z, Rodriguez EA, Adams SR, Kiliç K, Boas DA, Sakadžić S, Devor A, Fainman Y. Opt Express. 2019 Sep 30;27(20):28022-28035. |
Computational Modeling of Genetic Contributions to Excitability and Neural Coding in Layer V Pyramidal Cells: Applications to Schizophrenia Pathology. |
| Mäki-Marttunen T, Devor A, Phillips WA, Dale AM, Andreassen OA, Einevoll GT. Front Comput Neurosci. 2019 Sep 26;13:66. |
Development of a beam propagation method to simulate the point spread function degradation in scattering media. |
| Cheng X, Li Y, Mertz J, Sakadžić S, Devor A, Boas DA, Tian L. Opt Lett. 2019 Oct 15;44(20):4989-4992. |
Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development. |
| Trujillo CA, Gao R, Negraes PD, Gu J, Buchanan J, Preissl S, Wang A, Wu W, Haddad GG, Chaim IA, Domissy A, Vandenberghe M, Devor A, Yeo GW, Voytek B, Muotri AR. Cell Stem Cell. 2019 Oct 3;25(4):558-569.e7. |
Biophysical Psychiatry-How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders. |
| Mäki-Marttunen T, Kaufmann T, Elvsåshagen T, Devor A, Djurovic S, Westlye LT, Linne ML, Rietschel M, Schubert D, Borgwardt S, Efrim-Budisteanu M, Bettella F, Halnes G, Hagen E, Næss S, Ness TV, Moberget T, Metzner C, Edwards AG, Fyhn M, Dale AM, Einevoll GT, Andreassen OA. Front Psychiatry. 2019 Aug 6;10:534. |
Selective Formation of Porous Pt Nanorods for Highly Electrochemically Efficient Neural Electrode Interfaces. |
| Ganji M, Paulk AC, Yang JC, Vahidi NW, Lee SH, Liu R, Hossain L, Arneodo EM, Thunemann M, Shigyo M, Tanaka A, Ryu SB, Lee SW, Tchoe Y, Marsala M, Devor A, Cleary DR, Martin JR, Oh H, Gilja V, Gentner TQ, Fried SI, Halgren E, Cash SS, Dayeh SA. Nano Lett. 2019 Sep 11;19(9):6244-6254. |
More homogeneous capillary flow and oxygenation in deeper cortical layers correlate with increased oxygen extraction. |
| Li B, Esipova TV, Sencan I, Kılıç K, Fu B, Desjardins M, Moeini M, Kura S, Yaseen MA, Lesage F, Østergaard L, Devor A, Boas DA, Vinogradov SA, Sakadžić S. Elife. 2019 Jul 15;8. |
Measurement of the relative non-degenerate two-photon absorption cross-section for fluorescence microscopy. |
| Sadegh S, Yang MH, Ferri CGL, Thunemann M, Saisan PA, Devor A, Fainman Y. Opt Express. 2019 Mar 18;27(6):8335-8347. |
Two-photon microscopic imaging of capillary red blood cell flux in mouse brain reveals vulnerability of cerebral white matter to hypoperfusion. |
| Li B, Ohtomo R, Thunemann M, Adams SR, Yang J, Fu B, Yaseen MA, Ran C, Polimeni JR, Boas DA, Devor A, Lo EH, Arai K, Sakadžić S. J Cereb Blood Flow Metab. 2020 Mar;40(3):501-512. |
Correlation Structure in Micro-ECoG Recordings is Described by Spatially Coherent Components. |
| Rogers N, Hermiz J, Ganji M, Kaestner E, Kılıç K, Hossain L, Thunemann M, Cleary DR, Carter BS, Barba D, Devor A, Halgren E, Dayeh SA, Gilja V. PLoS Comput Biol. 2019 Feb 11;15(2):e1006769. |
Awake Mouse Imaging: From Two-Photon Microscopy to Blood Oxygen Level-Dependent Functional Magnetic Resonance Imaging. |
| Desjardins M, Kılıç K, Thunemann M, Mateo C, Holland D, Ferri CGL, Cremonesi JA, Li B, Cheng Q, Weldy KL, Saisan PA, Kleinfeld D, Komiyama T, Liu TT, Bussell R, Wong EC, Scadeng M, Dunn AK, Boas DA, Sakadžić S, Mandeville JB, Buxton RB, Dale AM, Devor A. Biol Psychiatry Cogn Neurosci Neuroimaging. 2019 Jun;4(6):533-542. |
Extracting individual neural activity recorded through splayed optical microfibers. |
| Perkins LN, Devor A, Gardner TJ, Boas DA. Neurophotonics. 2018 Oct;5(4):045009. |
Dependence of the MR signal on the magnetic susceptibility of blood studied with models based on real microvascular networks. |
| Cheng X, Berman AJL, Polimeni JR, Buxton RB, Gagnon L, Devor A, Sakadžić S, Boas DA. Magn Reson Med. 2019 Jun;81(6):3865-3874. |
Alterations in Schizophrenia-Associated Genes Can Lead to Increased Power in Delta Oscillations. |
| Mäki-Marttunen T, Krull F, Bettella F, Hagen E, Næss S, Ness TV, Moberget T, Elvsåshagen T, Metzner C, Devor A, Edwards AG, Fyhn M, Djurovic S, Dale AM, Andreassen OA, Einevoll GT. Cereb Cortex. 2019 Feb 1;29(2):875-891. |
In Vivo Two-Photon Voltage Imaging with Sulfonated Rhodamine Dyes. |
| Kulkarni RU, Vandenberghe M, Thunemann M, James F, Andreassen OA, Djurovic S, Devor A, Miller EW. ACS Cent Sci. 2018 Oct 24;4(10):1371-1378. |
Monolithic and Scalable Au Nanorod Substrates Improve PEDOT-Metal Adhesion and Stability in Neural Electrodes. |
| Ganji M, Hossain L, Tanaka A, Thunemann M, Halgren E, Gilja V, Devor A, Dayeh SA. Adv Healthc Mater. 2018 Nov;7(22):e1800923. |
Neuroethics Questions to Guide Ethical Research in the International Brain Initiatives. |
| Global Neuroethics Summit Delegates, Rommelfanger KS, Jeong SJ, Ema A, Fukushi T, Kasai K, Ramos KM, Salles A, Singh I. Neuron. 2018 Oct 10;100(1):19-36. |
Deep 2-photon imaging and artifact-free optogenetics through transparent graphene microelectrode arrays. |
| Thunemann M, Lu Y, Liu X, Kılıç K, Desjardins M, Vandenberghe M, Sadegh S, Saisan PA, Cheng Q, Weldy KL, Lyu H, Djurovic S, Andreassen OA, Dale AM, Devor A, Kuzum D. Nat Commun. 2018 May 23;9(1):2035. |
Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo. |
| Uhlirova H, Tian P, Kılıç K, Thunemann M, Sridhar VB, Chmelik R, Bartsch H, Dale AM, Devor A, Saisan PA. J Vis Exp. 2018 May 4;(135). |
Phasor analysis of NADH FLIM identifies pharmacological disruptions to mitochondrial metabolic processes in the rodent cerebral cortex. |
| Gómez CA, Sutin J, Wu W, Fu B, Uhlirova H, Devor A, Boas DA, Sakadžić S, Yaseen MA. PLoS One. 2018 Mar 21;13(3):e0194578. |
A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. |
| Mäki-Marttunen T, Halnes G, Devor A, Metzner C, Dale AM, Andreassen OA, Einevoll GT. J Neurosci Methods. 2018 Jan 1;293:264-283. |
Interstitial solute transport in 3D reconstructed neuropil occurs by diffusion rather than bulk flow. |
| Holter KE, Kehlet B, Devor A, Sejnowski TJ, Dale AM, Omholt SW, Ottersen OP, Nagelhus EA, Mardal KA, Pettersen KH. Proc Natl Acad Sci U S A. Sep 12;114(37):9894-9899 (2017). |
Fluorescence lifetime microscopy of NADH distinguishes alterations in cerebral metabolism in vivo. |
| Yaseen MA, Sutin J, Wu W, Fu B, Uhlirova H, Devor A, Boas DA, Sakadzic S. Biomed Opt Express. Apr 3;8(5):2368-2385 (2017). |
Genetic evidence for role of integration of fast and slow neurotransmission in schizophrenia. |
| Anna Devor, Ole A. Andreassen, Yunpeng Wang, Tuomo Mäki-Marttunen, Olav B. Smeland, Chun-Chieh Fan, Andrew J. Schork, Dominic Holland, Wesley K. Thompson, Aree Witoelar, Chi-Hua Chen, Rahul S. Desikan, Linda K. McEvoy, Srdjan Djurovic, Paul Greengard, Per Svenningsson, Gaute T. Einevoll, Anders M. Dale. Molecular Psychiatry. Jun;22(6):792-801 (2017). |
Tools for high resolution in vivo imaging of cellular and molecular mechanisms in cortical spreading depression and spreading depolarization. |
| Kivilcim Kilic, Hana Uhlirova, Peifang Tian, Mohammad Abbas Yaseen, Jonghwan Lee, Sergei A. Vinogradov, David A. Boas, Sava Sakadzic, Anna Devor. In: Neurobiological Basis of Migraine. Wiley-Blackwell; 1 edition (August 7, 2017). |
Neurovascular Network Explorer 2.0: a database of 2-photon single-vessel diameter measurements from mouse SI cortex in response to optogenetic stimulation. |
| Hana Uhlirova, Peifang Tian, Kivilcim Kilic, Martin Thunemann, Vishnu B. Sridhar, Hauke Bartsch, Anders M. Dale, Anna Devor, Payam A. Saisan. Frontiers in Neuroinformatics Feb 1;11:4 (2017). |
Non-degenerate 2-photon excitation in scattering medium for fluorescence microscopy. |
| Mu-Han Yang, Maxim Abashin, Payam A. Saisan, Peifang Tian, Christopher G. L. Ferri, Anna Devor, Yeshaiahu Fainman. Optics Express 24(26), 30173-30187 (2016). |
Two-photon microscopy measurement of cerebral metabolic rate of oxygen using periarteriolar oxygen concentration gradients. |
| Sakadzic S, Yaseen MA, Jaswal R, Roussakis E, Dale AM, Buxton RB, Vinogradov SA, Boas DA, Devor A. Neurophotonics 2016 Oct;3(4):045005. |
Modeling of Cerebral Oxygen Transport Based on In vivo Microscopic Imaging of Microvascular Network Structure, Blood Flow, and Oxygenation. |
| Gagnon L, Smith AF, Boas DA, Devor A, Secomb TW, Sakadzic S. Front Comput Neurosci. 2016 Aug 31;10:82. |
Validation and optimization of hypercapnic-calibrated fMRI from oxygen-sensitive two-photon microscopy. |
| Gagnon L, Sakadzic S, Lesage F, Pouliot P, Dale AM, Devor A, Buxton RB, Boas DA. Philos Trans R Soc Lond B Biol Sci. 2016 Oct 5;371(1705). |
The roadmap for estimation of cell-type-specific neuronal activity from non-invasive measurements. |
| Uhlirova H, Kilic K, Tian P, Sakadzic S, Gagnon L, Thunemann M, Desjardins M, Saisan PA, Nizar K, Yaseen MA, Hagler DJ Jr, Vandenberghe M, Djurovic S, Andreassen OA, Silva GA, Masliah E, Kleinfeld D, Vinogradov S, Buxton RB, Einevoll GT, Boas DA, Dale AM, Devor A. Philos Trans R Soc Lond B Biol Sci. 2016 Oct 5;371(1705). |
Cell type specificity of neurovascular coupling in cerebral cortex. |
| Uhlirova H†, Kilic K†, Tian P, Thunemann M, Desjardins M, Saisan PA, Sakadzic S, Ness TV, Mateo C, Cheng Q, Weldy KL, Razoux F, Vandenberghe M, Cremonesi JA, Ferri CG, Nizar K, Sridhar VB, Steed TC, Abashin M, Fainman Y, Masliah E, Djurovic S, Andreassen OA, Silva GA, Boas DA, Kleinfeld D, Buxton RB, Einevoll GT, Dale AM, Devor A. Elife 2016 May 31;5. |
Functional Effects of Schizophrenia-Linked Genetic Variants on Intrinsic Single-Neuron Excitability: A Modeling Study. |
| Mäki-Marttunen T, Halnes G, Devor A, Witoelar A, Bettella F, Djurovic S, Wang Y, Einevoll GT, Andreassen OA, Dale AM. Biol Psychiatry Cogn Neurosci Neuroimaging 2016 Jan 1;1(1):49-59. |
Generalized Laminar Population Analysis (gLPA) for Interpretation of Multielectrode Data from Cortex. |
| Glabska HT, Norheim E, Devor A, Dale AM, Einevoll GT, Wojcik DK. Front Neuroinform. 2016 Jan 25;10:1. |
Leveraging Genomic Annotations and Pleiotropic Enrichment for Improved Replication Rates in Schizophrenia GWAS. |
| Wang Y, Thompson WK, Schork AJ, Holland D, Chen CH, Bettella F, Desikan RS, Li W, Witoelar A, Zuber V, Devor A; Bipolar Disorder and Schizophrenia Working Group of the Psychiatric Genomics Consortium; Enhancing Neuro Imaging Genetics through Meta Analysis Consortium, Nöthen MM, Rietschel M, Chen Q, Werge T, Cichon S, Weinberger DR, Djurovic S, O’Donovan M, Visscher PM, Andreassen OA, Dale AM. PLoS Genet. 2016 Jan 25;12(1):e1005803. |
Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe. |
| Louis Gagnon, Sava Sakadzic, Frederic Lesage, Joseph Musacchia, Joel Lefebvre, Qianqian Fang, Meryen Yucel, Karleyton Evans, Emiri Mandeville, Julien Cohen-Adad, Jonathan Polimeni, Mohammad Yaseen, Eng Lo, Douglas Greve, Richard Buxton, Anders M. Dale, Anna Devor, and David Boas. J Neurosci. 2015 Feb 25;35(8):3663-75. |
Robust and fragile aspects of cortical blood flow in relation to the underlying angioarchitecture. |
| Shih AY, Ruhlmann C, Blinder P, Devor A, Drew PJ, Friedman B, Knutsen PM, Lyden PD, Matéo C, Mellander L, Nishimura N, Schaffer CB, Tsai PS, Kleinfeld D. Microcirculation. 2015 Apr;22(3):204-18. |
The BRAIN Initiative. |
| Devor A, Roe AW, Mahadevan-Jansen A, Boas DA. Neurophotonics 2014 Jul;1(1):011001. |
Large arteriolar component of oxygen delivery implies a safe margin of oxygen supply to cerebral tissue. |
| Sakadzic S, Mandeville ET, Gagnon L, Musacchia JJ, Yaseen MA, Yucel MA, Lefebvre J, Lesage F, Dale AM, Eikermann-Haerter K, Ayata C, Srinivasan VJ, Lo EH, Devor A, Boas DA. Nat Commun. 2014 Dec 8;5:5734. |
Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB® graphical user interface. |
| Vishnu B. Sridhar, Peifang Tian, Anders M. Dale, Anna Devor, Payam Saisan. Front Neuroinform. 2014 May 20;8:56. |
Functional imaging of cerebral oxygenation with intrinsic optical contrast and phosphorescent probes. |
| Devor A, Sakadzic S, Yaseen MA, Roussakis E, Tian P, Slovin H, Vanzetta I, Teng IC, Saisan PA, Sinks LE, Dale AM, Vinogradov SA, Boas DA. Optical imaging of cortical circuit dynamics” Series: NEUROMETHODS, 2013. Bruno Weber and Fritjof Helmchen, Editors. SPRINGER, New York. |
In vivo stimulus-induced vasodilation occurs without IP3 receptor activation and may precede astrocytic calcium increase. |
| Krystal Nizar†, Hana Uhlirova†, Peifang Tian, Payam A. Saisan, Qun Cheng, Lidia Reznichenko, Kimberly L. Weldy, Tyler C. Steed, Vishnu B. Sridhar, Christopher L. MacDonald, Jianxia Cui, Sergey L. Gratiy, Sava Sakadzic, David A. Boas, Thomas I. Beka, Gaute T. Einevoll, Ju Chen, Eliezer Masliah, Anders M. Dale, Gabriel A. Silva, Anna Devor. J Neurosci. 2013 May 8;33(19):8411-22. |
The challenge of connecting the dots in the B.R.A.I.N. |
| Devor A, Bandettini PA, Boas DA, Bower JM, Buxton RB, Cohen LB, Dale AM, Einevoll GT, Fox PT, Franceschini MA, Friston KJ, Fujimoto JG, Geyer MA, Greenberg JH, Halgren E, Hämäläinen MS, Helmchen F, Hyman BT, Jasanoff A, Jernigan TL, Judd LL, Kim SG, Kleinfeld D, Kopell NJ, Kutas M, Kwong KK, Larkum ME, Lo EH, Magistretti PJ, Mandeville JB, Masliah E, Mitra PP, Mobley WC, Moskowitz MA, Nimmerjahn A, Reynolds JH, Rosen BR, Salzberg BM, Schaffer CB, Silva GA, So PT, Spitzer NC, Tootell RB, Van Essen DC, Vanduffel W, Vinogradov SA, Wald LL, Wang LV, Weber B, Yodh AG. Neuron. 2013 Oct 16;80(2):270-4. |
In vivo alterations in calcium buffering capacity in transgenic mouse model of synucleinopathy. |
| Lidia Reznichenko, Qun Cheng, Krystal Nizar, Sergey L. Gratiy, Payam A. Saisan, Edward M. Rockenstein, Tanya Gonzalez, Christina Patrick, Brian Spencer, Paula Desplats, Anders M. Dale, Anna Devor, Eliezer Masliah. J Neurosci. 2012 Jul 18;32(29):9992-8. |
Neuronal basis of non-invasive functional imaging: from BOLD fMRI to the underlying microscopic neurovascular dynamics. |
| Devor A, Boas DA, Einevoll GT, Buxton RB, Dale AM. In Neural Metabolism In Vivo: 4 (Advances in Neurobiology). Chapter 15. Volume Editor, In-Young Choi. 2012, Springer. |
Neurovascular imaging. |
| Devor A,Boas DA. Front Neuroenergetics. 2012;4:1. Epub 2012 Jan 18. |
On the estimation of population-specific synaptic currents from laminar multielectrode recordings. |
| Gratiy SL, Devor A, Einevoll GT, Dale AM. Front Neuroinform. 2011;5:32. Epub 2011 Dec 20. |
Frontiers in optical imaging of cerebral blood flow and metabolism. |
| Devor A, Sakadzic S, Srinivasan VJ, Yaseen MA, Nizar K, Saisan PA, Tian P, Dale AM, Vinogradov SA, Franceschini MA, Boas DA. J Cereb Blood Flow Metab. 2012 Jan 18. |
“Overshoot” of O2 is required to maintain baseline tissue oxygenation at locations distal to blood vessels. |
| Devor A, Sakadzic S., Saisan PA, Yaseen MA, Roussakis E, Srinivasan VJ, Vinogradov SA, Rosen BR, Buxton RB, Dale AM, Boas DA. J Neurosci. 2011 Sep 21;31(38):13676-81. |
Two-photon microscopy of cortical NADH fluorescence intensity changes: Correcting contamination from the hemodynamic response. |
| Baraghis E, Devor A, Fang Q, Srinivasan VJ, Wu W, Lesage F, Ayata C, Kasischke KA, Boas DA, Sakadzic S. J Biomed Opt. 2011 Oct;16(10):106003. |
Monte Carlo simulation of the spatial resolution and depth sensitivity of two dimensional optical imaging of the brain. |
| Tian P, Devor A, Sakadžic S, Dale AM, Boas DA. J Biomed. Opt. 2011 Jan/Feb;16(1):016006. |
Two-photon high-resolution measurement of partial pressure of oxygen in cerebral vasculature and tissue. |
| Sakadzic S, Roussakis E, Yaseen MA, Mandeville ET, Srinivasan VJ, Arai K, Ruvinskaya S, Devor A, Lo EH, Vinogradov SA, Boas DA. Nat Methods. 2010 Sep;7(9):755-9. Epub 2010 Aug 8. |
Cortical depth-specific microvascular dilation underlies laminar differences in blood oxygenation level-dependent functional MRI signal. |
| Tian P, Teng IC, May LD, Kurz R, Lu K, Scadeng M, Hillman EM, De Crespigny AJ, D’Arceuil HE, Mandeville JB, Marota JJ, Rosen BR, Liu TT, Boas DA, Buxton RB, Dale AM, Devor A. Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15246-51. Epub 2010 Aug 9. |
The Possible Role of CO(2) in Producing A Post-Stimulus CBF and BOLD Undershoot. |
| Yücel MA, Devor A, Akin A, Boas DA. Front Neuroenergetics. 2009;1:7. Epub 2009 Nov 18. |
Sensitivity of neural-hemodynamic coupling to alterations in cerebral blood flow during hypercapnia. |
| Huppert TJ, Jones PB, Devor A, Dunn AK, Teng IC, Dale AM, Boas DA. J Biomed Opt. 2009 Jul-Aug;14(4):044038. |
Optical coherence tomography (OCT) reveals depth-resolved dynamics during functional brain activation. |
| Chen Y, Aguirre AD, Ruvinskaya L, Devor A, Boas DA, Fujimoto JG. J Neurosci Methods. 2009 Mar 30;178(1):162-73. Epub 2008 Dec 11. |
Estimation of thalamocortical and intracortical network models from joint thalamic single-electrode and cortical laminar-electrode recordings in the rat barrel system. |
| Blomquist P, Devor A, Indahl UG, Ulbert I, Einevoll GT, Dale AM. PLoS Comput Biol. 2009 Mar;5(3):e1000328. Epub 2009 Mar 27. |
Stimulus-induced changes in blood flow and 2-deoxyglucose uptake dissociate in ipsilateral somatosensory cortex. |
| Devor A, Hillman EM, Tian P, Waeber C, Teng IC, Ruvinskaya L, Shalinsky MH, Zhu H, Haslinger RH, Narayanan SN, Ulbert I, Dunn AK, Lo EH, Rosen BR, Dale AM, Kleinfeld D, Boas DA. J Neurosci. 2008 Dec 31;28(53):14347-57. |
Oxygen advection and diffusion in a three- dimensional vascular anatomical network. |
| Fang Q, Sakadzic S, Ruvinskaya L, Devor A, Dale AM, Boas DA. Opt Express. 2008 Oct 27;16(22):17530-41. |
A vascular anatomical network model of the spatio-temporal response to brain activation. |
| Boas DA, Jones SR, Devor A, Huppert TJ, Dale AM. Neuroimage. 2008 Apr 15;40(3):1116-29. Epub 2008 Jan 15. |
Suppressed neuronal activity and concurrent arteriolar vasoconstriction may explain negative blood oxygenation level-dependent signal. |
| Devor A, Tian P, Nishimura N, Teng IC, Hillman EM, Narayanan SN, Ulbert I, Boas DA, Kleinfeld D, Dale AM J Neurosci. 2007 Apr 18;27(16):4452-9. |
Depth-resolved optical imaging and microscopy of vascular compartment dynamics during somatosensory stimulation. |
| Hillman EM, Devor A, Bouchard MB, Dunn AK, Krauss GW, Skoch J, Bacskai BJ, Dale AM, Boas DA Neuroimage. 2007 Mar;35(1):89-104. Epub 2007 Jan 11. |
Is there a common origin to surround-inhibition as seen through electrical activity versus hemodynamic changes? Focus on “Duration-dependent response in SI to vibrotactile stimulation in squirrel monkey”. |
| Devor A, Trevelyan A, Kleinfeld D J Neurophysiol. 2007 Mar;97(3):1880-2. Epub 2007 Jan 10. |
Laminar population analysis: estimating firing rates and evoked synaptic activity from multielectrode recordings in rat barrel cortex. |
| Einevoll GT, Pettersen KH, Devor A, Ulbert I, Halgren E, Dale AM J Neurophysiol. 2007 Mar;97(3):2174-90. Epub 2006 Dec 20. |
Depth-resolved imaging of functional activation in the rat cerebral cortex using optical coherence tomography. |
| Aguirre AD, Chen Y, Fujimoto JG, Ruvinskaya L, Devor A, Boas DA Opt Lett. 2006 Dec 1;31(23):3459-61. |
Analysis of LFP Phase Predicts Sensory Response of Barrel Cortex. |
| Haslinger R, Ulbert I, Moore C. Brown E, Devor A. J Neurophysiol. 2006 Sep;96(3):1658-63. Epub 2006 Jun 14. |
Current-source density estimation based on inversion of electrostatic forward solution: Effects of finite extent of neuronal activity and conductivity discontinuities. |
| Pettersen K, Devor A, Ulbert I, Dale AM, Einevoll GT. J Neurosci Methods. 2006 Jun 30;154(1-2):116-33. Epub 2006 Jan 24. |
Spatial extent of oxygen metabolism and hemodynamic changes during functional activation of the rat somatosensory cortex. |
| Dunn AK, Devor A, Dale AM, Boas DA. Neuroimage. 2005 Aug 15; 27(2):279-290. |
Determination of optimal exposure time for imaging of blood flow changes with laser speckle contrast imaging. |
| Yuan S, Devor A, Boas DA, Dunn AK. Appl Opt. 2005 Apr 1;44(10):1823-30. |
Coupling of the Cortical Hemodynamic Response to Cortical and Thalamic Neuronal Activity. |
| Devor A, Ulbert I, Dunn AK, Narayanan SN, Jones SR, Andermann ML, Boas DA, Dale AM. PNAS 2005 Mar 8;102(10):3822-7. |
In vivo tracing of major rat brain pathways using manganese-enhanced magnetic resonance imaging and three-dimensional digital atlasing. |
| Leergaard TB, Bjaalie JG, Devor A, Wald LL, Dale AM. Neuroimage. 2003 Nov;20(3):1591-600. |
Coupling of total hemoglobin concentration, oxygenation, and neural activity in rat somatosensory cortex. |
| Devor A, Dunn AK, Andermann ML, Ulbert I, Boas DA, Dale AM. Neuron. 2003 Jul 17;39(2):353-9. |
Deformation of network connectivity in the inferior olive of connexin 36-deficient mice is compensated by morphological and electrophysiological changes at the single neuron level. |
| De Zeeuw CI, Chorev E, Devor A, Manor Y, Van Der Giessen RS, De Jeu MT, Hoogenraad CC, Bijman J, Ruigrok TJ, French P, Jaarsma D, Kistler WM, Meier C, Petrasch-Parwez E, Dermietzel R, Sohl G, Gueldenagel M, Willecke K, Yarom Y. J Neurosci. 2003 Jun 1;23(11):4700-11. |
Simultaneous imaging of total cerebral hemoglobin concentration, oxygenation, and blood flow during functional activation. |
| Dunn AK, Devor A, Bolay H, Andermann ML, Moskowitz MA, Dale AM, Boas DA. Opt Lett. 2003 Jan 1;28(1):28-30. |
Generation and propagation of subthreshold waves in a network of inferior olivary neurons. |
| Devor A, Yarom Y. J Neurophysiol. 2002 Jun;87(6):3059-69. |
Electrotonic coupling in the inferior olivary nucleus revealed by simultaneous double patch recordings. |
| Devor A, Yarom Y. J Neurophysiol. 2002 Jun;87(6):3048-58. |
The great gate: control of sensory information flow to the cerebellum. |
| Devor A. Cerebellum. 2002 Jan-Mar;1(1):27-34. Review. |
Coherence of subthreshold activity in coupled inferior olivary neurons. |
| Devor A, Yarom Y. Ann N Y Acad Sci. 2002 Dec;978:508. |
Spatial distribution and subunit composition of GABA(A) receptors in the inferior olivary nucleus. |
| Devor A, Fritschy JM, Yarom Y. J Neurophysiol. 2001 Apr;85(4):1686-96. |
To beat or not to beat: a decision taken at the network level. |
| Manor Y, Yarom Y, Chorev E, Devor A. J Physiol Paris. 2000 Sep-Dec;94(5-6):375-90. |
Is the cerebellum like cerebellar-like structures? |
| Manor Y, Yarom Y, Chorev E, Devor A. Brain Res Brain Res Rev. 2000 Dec;34(3):149-56. |
GABAergic modulation of olivary oscillations. |
| Devor A, Yarom Y. Brain Res Brain Res Rev. 2000 Dec;34(3):149-56. |
Optical recording from cerebellar Purkinje cells using intracellularly injected voltage-sensitive dyes. |
| Kogan A, Ross WN, Zecevic D, Lasser-Ross N. Brain Res. 1995 Nov 27;700(1-2):235-9. |