Tools

Tools/pipelines developed by our lab members

1. One-step optimized DCC pipeline to detect circRNAs (coming)

2. DeTREM: Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data (GitHub – nkoneill/DeTREM: MuSiC modified to use single-nuclei RNA-Seq reference)

3. MitoH3: Mitochondria DNA Haplogroup, Homoplasmic and Heteroplasmic variants calling pipeline for Alzheimer’s Disease Sequencing Project. (GitHub – MarchOnion/MitoH3)