{"id":43,"date":"2022-08-04T14:40:51","date_gmt":"2022-08-04T18:40:51","guid":{"rendered":"https:\/\/sites.bu.edu\/zhanglab\/?page_id=43"},"modified":"2025-03-20T22:50:42","modified_gmt":"2025-03-21T02:50:42","slug":"tools","status":"publish","type":"page","link":"https:\/\/sites.bu.edu\/zhanglab\/tools\/","title":{"rendered":"Tools"},"content":{"rendered":"<h3>Tools\/pipelines developed by our lab members<\/h3>\n<p>1. One-step optimized <strong>DCC<\/strong> pipeline to detect circRNAs (coming)<\/p>\n<p>2. <strong>DeTREM<\/strong>: Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data (<a href=\"https:\/\/github.com\/nkoneill\/DeTREM\">GitHub &#8211; nkoneill\/DeTREM: MuSiC modified to use single-nuclei RNA-Seq reference<\/a>)<\/p>\n<p>3. <b>MitoH3<\/b>: <b>Mito<\/b>chondria DNA <b>H<\/b>aplogroup, <b>H<\/b>omoplasmic and <b>H<\/b>eteroplasmic variants calling pipeline for Alzheimer\u2019s Disease Sequencing Project. (<a href=\"https:\/\/github.com\/MarchOnion\/MitoH3\">GitHub &#8211; MarchOnion\/MitoH3<\/a>)<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Tools\/pipelines developed by our lab members 1. One-step optimized DCC pipeline to detect circRNAs (coming) 2. DeTREM: Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data (GitHub &#8211; nkoneill\/DeTREM: MuSiC modified to use single-nuclei RNA-Seq reference) 3. MitoH3: Mitochondria DNA Haplogroup, Homoplasmic and Heteroplasmic variants calling pipeline for Alzheimer\u2019s Disease Sequencing [&hellip;]<\/p>\n","protected":false},"author":21018,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/pages\/43"}],"collection":[{"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/users\/21018"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/comments?post=43"}],"version-history":[{"count":9,"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/pages\/43\/revisions"}],"predecessor-version":[{"id":598,"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/pages\/43\/revisions\/598"}],"wp:attachment":[{"href":"https:\/\/sites.bu.edu\/zhanglab\/wp-json\/wp\/v2\/media?parent=43"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}