{"id":85,"date":"2018-04-10T11:55:27","date_gmt":"2018-04-10T15:55:27","guid":{"rendered":"https:\/\/sites.bu.edu\/rotjanlab\/?page_id=85"},"modified":"2020-11-16T11:31:38","modified_gmt":"2020-11-16T16:31:38","slug":"data-code","status":"publish","type":"page","link":"https:\/\/sites.bu.edu\/rotjanlab\/data-code\/","title":{"rendered":"Data & Code"},"content":{"rendered":"
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  1. Protocol and programs for mortality threshold analysis, designed and calculated with MATLAB R2007b.\u00a0https:\/\/doi.org\/10.1371\/journal.pone.0029535.s002<\/a><\/li>\n<\/ol>\n

    Citation:\u00a0<\/strong><\/em>Thornhill DJ, Rotjan RD, Todd BD, Chilcoat GC, Iglesias-Prieto R, Kemp DW, et al. (2011) A Connection between Colony Biomass and Death in Caribbean Reef-Building Corals. PLoS ONE 6(12): e29535. https:\/\/doi.org\/10.1371\/journal.pone.0029535<\/a><\/p>\n

    2.\u00a0Data from: A connection between colony biomass and death in Caribbean reef-building corals.\u00a0https:\/\/datadryad.org\/\/resource\/doi:10.5061\/dryad.gm005fg8\/1<\/a><\/span><\/p>\n

    Citation:\u00a0<\/strong><\/em>Thornhill DJ, Rotjan RD, Todd BD, Chilcoat GC, Iglesias-Prieto R,\u00a0<\/span>LaJeunesse TC, Kemp DW, Reynolds JM, Schmidt GW, Shannon T, Warner ME, Fitt WK (2011) Data from: A connection between colony biomass and death in Caribbean reef-building corals.\u00a0<\/span>Dryad Digital Repository.\u00a0<\/span><\/span>https:\/\/doi.org\/10.5061\/dryad.gm005fg8<\/a><\/p>\n

    \u00a0 \u00a0 \u00a0 \u00a0 3.\u00a0Protocol and programs for\u00a0custom RGB color analysis with color standards, designed\u00a0 and calculated with MATLAB R2007b.<\/p>\n

    Citation:\u00a0<\/strong><\/em>Burmester, E., A. Breef-Pilz, N. Lawrence, L. Kaufman, J. Finnerty, and R.D. Rotjan. 2018. The impact of autotrophic versus heterotrophic nutritional pathways on colony health and wound recovery in corals. Ecology and Evolution 00:1-12. To access this custom program (part of the supplemental materials), please click here<\/a>.\u00a0<\/span><\/p>\n

    4.\u00a0Data from the 2017 NOAA\u00a0Okeanos Explorer<\/em> Cruise to the Phoenix Islands Protected Area. Located here.\u00a0<\/a><\/p>\n

    Citation:\u00a0<\/strong>Okeanos Explorer<\/em>\u00a0Cruise EX1703: CAPSTONE Howland\/Baker PRIMNM and PIPA (ROV\/Mapping). 2017 B.R.C. Kennedy, NOAA\/OAR\/OER (Expedition Coordinator); D. Sowers, NOAA\/OAR\/OER (Mapping Lead).\"\"<\/span><\/p>\n

    5.\u00a0Data from the October 2017 R\/V Falkor Cruise to the Phoenix Islands Protected Area.\u00a0http:\/\/www.rvdata.us\/catalog\/FK171005<\/a><\/p>\n

    Citation:\u00a0<\/strong><\/em>Cordes, E, R.D. Rotjan, and T. Shank. 2017. Discovering Deep Sea Corals of the Phoenix Islands. Schmidt Ocean Institute\u00a0cruise FK171005.\u00a0<\/span><\/p>\n

    6. Data files demonstrating that Astrangia poculata<\/em>\u00a0corals prefer plastic microbeads over brine shrimp eggs<\/p>\n

    Citation:\u00a0<\/strong><\/em><\/span>Rotjan RD, Sharp KH, Gauthier AE, Yelton R, Baron Lopez EM, Carilli J, Kagan JC, Urban-Rich J\u00a0<\/span>(2019)\u00a0<\/span>Data from: Patterns, dynamics and consequences of microplastic ingestion by the temperate coral, Astrangia poculata<\/em>.\u00a0<\/span>Proceedings of the Royal Society B\u00a0 \u00a0\u00a0<\/span>\u00a0\u00a0<\/span>https:\/\/doi.org\/10.5061\/dryad.3qc6328<\/span><\/a><\/span>\u00a0<\/span><\/p>\n

    7.\u00a0Genetic sequences for larval tuna from Hernandez et al 2019 Evidence and patterns of tuna spawning inside a large no-take Marine Protected Area<\/a>\u00a0were deposited to GenBank and can be found at accession numbers\u00a0MK567307-MK567376<\/p>\n

    Citation:\u00a0<\/strong><\/em><\/span>Hernandez, C.<\/span>, J. Witting, C. Willis<\/span>, S. Thorrold, J. Llopiz, and\u00a0<\/span>R.D. Rotjan<\/span>. 2019.\u00a0<\/span>Evidence and patterns of tuna spawning inside a large no-take Marine Protected Area.\u00a0<\/span>Scientific Reports\u00a0<\/span><\/i>9 (<\/span>10772)\u00a0\u00a0https:\/\/doi.org\/10.1038\/s41598-019-47161-0<\/a><\/span><\/p>\n

    \u00a0 \u00a0 \u00a0 \u00a08. Machine-accessible metadata file describing the reported data in Helmuth et al. 2020:\u00a0 https:\/\/doi.org\/10.6084\/m9.figshare.13095506<\/a><\/span><\/p>\n

    Citation: <\/strong><\/em><\/span>Helmuth, B., J.J. Leichter, R.D. Rotjan, K.D. Castillo, C. Fieseler, S. Jones, and F. Choi. 2020.\u00a0<\/span>High resolution spatiotemporal patterns of seawater temperatures across the Belize Mesoamerican Barrier Reef<\/a>.\u00a0<\/span>Nature Scientific Data<\/em>\u00a07(396): 1-6.\u00a0<\/span>https:\/\/doi.org\/10.1038\/s41597-020-00733-6<\/a><\/p>\n

     <\/p>\n

     <\/p>\n","protected":false},"excerpt":{"rendered":"

    Protocol and programs for mortality threshold analysis, designed and calculated with MATLAB R2007b.\u00a0https:\/\/doi.org\/10.1371\/journal.pone.0029535.s002 Citation:\u00a0Thornhill DJ, Rotjan RD, Todd BD, Chilcoat GC, Iglesias-Prieto R, Kemp DW, et al. (2011) A Connection between Colony Biomass and Death in Caribbean Reef-Building Corals. PLoS ONE 6(12): e29535. https:\/\/doi.org\/10.1371\/journal.pone.0029535 2.\u00a0Data from: A connection between colony biomass and death in Caribbean […]<\/p>\n","protected":false},"author":14624,"featured_media":0,"parent":0,"menu_order":10,"comment_status":"closed","ping_status":"closed","template":"page-templates\/no-sidebars.php","meta":[],"_links":{"self":[{"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/pages\/85"}],"collection":[{"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/users\/14624"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/comments?post=85"}],"version-history":[{"count":26,"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/pages\/85\/revisions"}],"predecessor-version":[{"id":1443,"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/pages\/85\/revisions\/1443"}],"wp:attachment":[{"href":"https:\/\/sites.bu.edu\/rotjanlab\/wp-json\/wp\/v2\/media?parent=85"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}