{"id":15,"date":"2016-09-08T23:05:01","date_gmt":"2016-09-09T03:05:01","guid":{"rendered":"https:\/\/sites.bu.edu\/nroehner\/?page_id=15"},"modified":"2016-11-17T17:07:43","modified_gmt":"2016-11-17T22:07:43","slug":"cv","status":"publish","type":"page","link":"https:\/\/sites.bu.edu\/nroehner\/cv\/","title":{"rendered":""},"content":{"rendered":"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Education<\/strong><\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Degree<\/td>\nPh.D. in Bioengineering (2014)<\/strong><\/td>\n<\/td>\n<\/tr>\n
Institution<\/td>\nUniversity of Utah<\/strong><\/td>\nSalt Lake City, UT<\/td>\n<\/tr>\n
<\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Degree<\/span><\/td>\nB.S. in Bioengineering (2010)<\/strong><\/td>\n<\/td>\n<\/tr>\n
Institution<\/span><\/td>\nUniversity of Washington<\/strong><\/td>\nSeattle, WA<\/span><\/td>\n<\/tr>\n
<\/span><\/td>\n<\/strong><\/td>\n<\/span><\/td>\n<\/tr>\n
Professional Appointments<\/strong><\/td>\n<\/td>\n<\/td>\n<\/tr>\n
Institution<\/td>\nBoston University\/Broad Institute<\/strong><\/td>\nBoston, MA\/Cambridge, MA<\/td>\n<\/tr>\n
Department<\/td>\nElectrical and Computer Engineering<\/strong><\/td>\n<\/td>\n<\/tr>\n
Title<\/td>\nPostdoctoral Researcher<\/strong><\/td>\n<\/td>\n<\/tr>\n
Period<\/td>\n2014 – Present<\/strong><\/td>\n<\/td>\n<\/tr>\n
<\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Publications<\/strong><\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Journal Articles<\/em><\/td>\n<\/td>\n<\/td>\n<\/tr>\n
2016<\/td>\nNicholas Roehner et al., “Sharing structure and function in biological design with SBOL 2.0,” in ACS Synthetic Biology<\/em>, vol. 5, pp. 498-506, 2016.<\/td>\n<\/tr>\n
<\/td>\nNicholas Roehner, Eric M. Young, Christopher A. Voigt, D. Benjamin Gordon, and Douglas Densmore, “Double Dutch: a tool for designing combinatorial libraries of biological systems,” in ACS Synthetic Biology<\/em>, vol. 5, pp. 507-517, 2016.<\/td>\n<\/tr>\n
<\/td>\nZhen Zhang et al., “libSBOLj 2.0: a Java library to support SBOL 2.0,” in IEEE Life Sciences Letters<\/em>, vol. 1, pp. 34-37, 2016.<\/td>\n<\/tr>\n
<\/td>\nTramy Nguyen, Nicholas Roehner, Zach Zundel, and Chris J. Myers, “A converter from the Systems Biology Markup Language to the Synthetic Biology Open Language,” in ACS Synthetic Biology<\/em>, vol. 5, pp. 479-486, 2016.<\/td>\n<\/tr>\n
2015<\/td>\nNicholas Roehner, Zhen Zhang, Tramy Nguyen, and Chris J. Myers, “Generating Systems Biology Markup Language models from the Synthetic Biology Open Language,” in ACS Synthetic Biology<\/em>, vol. 4, pp. 873-879, 2015.<\/td>\n<\/tr>\n
<\/td>\nPrashant Vaidyanathan et al., “A framework for genetic logic synthesis,” in Proceedings of the IEEE<\/em>, vol. 103, pp. 2196-2207, 2015.<\/td>\n<\/tr>\n
<\/td>\nBryan Bartley et al., “Synthetic Biology Open Language (SBOL) 2.0.0,” in Journal of Integrative Bioinformatics<\/em>, vol. 12, pp. 272, 2015.<\/td>\n<\/tr>\n
<\/td>\nNicholas Roehner et al., “Proposed data model for the next version of the Synthetic Biology Open Language,” in ACS Synthetic Biology<\/em>, vol. 4, pp. 57-71, 2015.<\/td>\n<\/tr>\n
2014<\/td>\nNicholas Roehner and Chris J. Myers, “Directed acyclic graph-based technology mapping of genetic circuit models,” in ACS Synthetic Biology<\/em>, vol. 3, pp. 543-555, 2014.<\/td>\n<\/tr>\n
<\/td>\nNicholas Roehner and Chris. J Myers, “A methodology to annotate Systems Biology Markup Language models with the Synthetic Biology Open Language,” in ACS Synthetic Biology, vol. 3, pp. 57-66, 2014.<\/td>\n<\/tr>\n
<\/td>\nMichal Galdzicki et al., “The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology,” in Nature Biotechnology<\/em>, vol. 32, pp. 545-550, 2014.<\/td>\n<\/tr>\n
<\/td>\nCurtis Madsen, Zhen Zhang, Nicholas Roehner, Chris Winstead, and Chris Myers, “Stochastic model checking of genetic circuits,” in ACM Journal of Emerging Technologies in Computing Systems<\/em>, vol. 11, pp. 23:1-23:21, 2014.<\/td>\n<\/tr>\n
2012<\/td>\nCurtis Madsen, Chris J. Myers, Tyler Patterson, Nicholas Roehner, Jason T. Stevens, and Chris Winstead, “Design and test of genetic circuits using iBioSim,” in Design and Test of Computers<\/em>, vol. 29, pp. 32-39, 2012.<\/td>\n<\/tr>\n
Book Chapters<\/em><\/td>\n<\/td>\n<\/tr>\n
2015<\/td>\nChris Myers et al., “The Synthetic Biology Open Language,” in Computational Methods in Synthetic Biology<\/em> (Methods in Molecular Biology Series 1244), Mario Marchisio, Ed., New York City, Springer New York, 2015, ch. 11, pp. 323-336.<\/td>\n<\/tr>\n
<\/td>\nCurtis Madsen, Chris Myers, Nicholas Roehner, Chris Winstead, and Zhen Zhang, “Efficient analysis methods in synthetic biology,” in\u00a0Computational Methods in Synthetic Biology<\/em> (Methods in Molecular Biology Series 1244), Mario Marchisio, Ed., New York City, Springer New York, 2015, ch. 11, pp. 217-257.<\/span><\/td>\n<\/tr>\n
Conference Papers<\/em><\/td>\n<\/td>\n<\/tr>\n
2012<\/td>\nCurtis Madsen, Chris J. Myers, Nicholas Roehner, Chris Winstead, and Zhen Zhang, “Utilizing stochastic model checking to analyze genetic circuits,” in 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)<\/em>, San Diego, CA, 9-12 May 2012, pp. 379-386.<\/span><\/td>\n<\/tr>\n
Technical Reports<\/em><\/td>\n<\/td>\n<\/tr>\n
2015<\/td>\nBryan Bartley et al., “Synthetic Biology Open Language (SBOL) version 2.0.0,” BioBricks Foundation, BBF RFC 108, 2015, DOI: 1721.1\/98369.<\/td>\n<\/tr>\n
2012<\/td>\nMichal Galdzicki et al., “Synthetic Biology Open Language (SBOL) version 1.1.0,” BioBricks Foundation, BBF RFC 87, 2012, DOI: 1721.1\/73909.<\/td>\n<\/tr>\n
<\/td>\n<\/td>\n<\/tr>\n
Awards<\/strong><\/td>\n<\/td>\n<\/tr>\n
2016<\/td>\n2nd Annual Allan Kuchinsky IWBDA Scholarship<\/td>\n<\/tr>\n
<\/td>\n<\/td>\n<\/tr>\n
Conference Activity<\/strong><\/td>\n<\/td>\n<\/tr>\n
Service<\/em><\/td>\n<\/td>\n<\/tr>\n
2016<\/em><\/td>\nGenetic logic session chair, 8th International Workshop on Bio-Design Automation (IWBDA), Newcastle Upon Type, UK, 16-18 Aug. 2016.<\/td>\n<\/tr>\n
<\/td>\nProgram committee member, 8th IWBDA,\u00a0Newcastle Upon Type, UK, 16-18 Aug. 2016.<\/span><\/td>\n<\/tr>\n
2015<\/td>\nSynthetic biology session chair, Computational Modeling in Biology Network (COMBINE) 2015, Salt Lake City, UT, 12-16 Oct. 2015.<\/td>\n<\/tr>\n
<\/td>\nProgram committee member, 7th IWBDA, Seattle, WA, 19-21 Aug. 2015.<\/td>\n<\/tr>\n
<\/td>\nDigital biological information panel member, NIST Synthetic Biology Standards Consortium (SBSC) Kick-Off Workshop, Stanford, CA, 31 Mar. 2015.<\/td>\n<\/tr>\n
Talks<\/em><\/td>\n<\/td>\n<\/tr>\n
2016<\/em><\/td>\n“How to remember and revisit many genetic design variants automatically,” 8th IWBDA, Newcastle Upon Tyne, UK, 16-18 Aug. 2016.<\/td>\n<\/tr>\n
<\/td>\n“How\u00a0to remember and revisit many genetic designs automatically,” Synthetic Biology Engineering Research Center (Synberc) Spring 2016 Retreat, Berkeley, CA, 23-24 Mar. 2016.<\/span><\/td>\n<\/tr>\n
2015<\/td>\n“Multiplicity of representation in SBOL 2.0,” COMBINE 2015, Salt Lake City, UT, 12-16 Oct. 2015.<\/td>\n<\/tr>\n
<\/td>\n“Double Dutch: a tool for designing libraries of variant metabolic pathways,” 7th IWBDA, Seattle, WA, 19-21 Aug. 2015.<\/td>\n<\/tr>\n
<\/td>\n“The Synthetic Biology Open Language 2.0,” 7th IWBDA, Seattle, WA, 19-21 Aug. 2015.<\/td>\n<\/tr>\n
2014<\/td>\n“Generating SBML models from SBOL,” COMBINE 2014, Los Angeles, CA, 18-22 Aug. 2014.<\/td>\n<\/tr>\n
<\/td>\n“A proposed data model for the next version of the Synthetic Biology Open Language,” 2014 Synthetic Biology: Engineering, Evolution and Design (SEED), London, 14-17 Jul 2014.<\/td>\n<\/tr>\n
2013<\/td>\n“Directed acyclic graph-based technology mapping of genetic circuit models,” 5th IWBDA, London, 12-13 Jul. 2013.<\/td>\n<\/tr>\n
2012<\/td>\n“A methodology to annotate Systems Biology Markup Language Models with the Synthetic Biology Open Language,” Institute of Biological Engineering (IBE) 2012 Wetern Regional Conference, Logan, UT, Oct. 2012.<\/td>\n<\/tr>\n
<\/td>\n“A methodology to annotate Systems Biology Markup Language Models with the Synthetic Biology Open Language,” Special Interest Group on Biological Systems Design (BSD-SIG) at the 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, 13-17 Jul. 2012.<\/span><\/td>\n<\/tr>\n
<\/td>\n<\/span><\/td>\n<\/tr>\n
Teaching Experience<\/strong><\/td>\n<\/span><\/td>\n<\/tr>\n
Course<\/td>\nComputational Synthetic Biology for Engineers<\/strong><\/td>\n<\/strong><\/td>\n<\/tr>\n
Institution<\/td>\nBoston University<\/strong><\/td>\nBoston, MA<\/td>\n<\/tr>\n
Title<\/td>\nCo-Instructor<\/strong><\/td>\n<\/strong><\/td>\n<\/tr>\n
Term<\/td>\nSpring 2016<\/strong><\/td>\n<\/strong><\/td>\n<\/tr>\n
<\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Course<\/td>\nBio-Signal Processing<\/strong><\/td>\n<\/td>\n<\/tr>\n
Institution<\/td>\nUniversity of Utah<\/strong><\/td>\nSalt Lake City, UT<\/td>\n<\/tr>\n
Title<\/td>\nTeaching Assistant<\/strong><\/td>\n<\/td>\n<\/tr>\n
Term<\/td>\nSpring 2012<\/strong><\/td>\n<\/td>\n<\/tr>\n
<\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Research Experience<\/strong><\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Institution<\/td>\nUniversity of Utah<\/strong><\/td>\nSalt Lake City, UT<\/td>\n<\/tr>\n
Department<\/td>\nBioengineering<\/strong><\/td>\n<\/td>\n<\/tr>\n
Title<\/td>\nResearch Assistant<\/strong><\/td>\n<\/td>\n<\/tr>\n
Period<\/td>\n2010-2014<\/strong><\/td>\n<\/td>\n<\/tr>\n
<\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
Service to Profession<\/strong><\/td>\n<\/strong><\/td>\n<\/td>\n<\/tr>\n
<\/td>\nSBOL Developers Group<\/td>\nMember, 2011-Present<\/td>\n<\/tr>\n
<\/td>\n<\/td>\nEditor, 2013-2015<\/td>\n<\/tr>\n
<\/td>\nACS Synthetic Biology<\/td>\nReviewer, 2016<\/td>\n<\/tr>\n
<\/td>\nIET Systems Biology<\/td>\nReviewer, 2016<\/td>\n<\/tr>\n
<\/td>\nPLoS ONE<\/td>\nReviewer, 2015<\/td>\n<\/tr>\n
<\/td>\nMathematical Biosciences<\/td>\nReviewer, 2015<\/span><\/td>\n<\/tr>\n
<\/td>\n<\/td>\n<\/span><\/td>\n<\/tr>\n
Professional Skills<\/strong><\/td>\n<\/td>\n<\/span><\/td>\n<\/tr>\n
<\/strong><\/td>\nProgramming Languages<\/td>\nJava, JavaScript, MATLAB, Python, C++<\/td>\n<\/tr>\n
<\/td>\nDomain-Specific\u00a0Standards<\/td>\nSynthetic Biology Open Language (SBOL), Systems Biology Markup Language (SBML)<\/td>\n<\/tr>\n
<\/td>\nSoftware\u00a0Development Tools<\/td>\nEclipse, Git, Maven<\/td>\n<\/tr>\n
<\/td>\nDatabase Systems<\/td>\nNeo4j<\/td>\n<\/tr>\n
<\/td>\nGenetic Engineering<\/td>\nCell Culture, Flow Cytometry, Molecular Cloning<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Education Degree Ph.D. in Bioengineering (2014) Institution University of Utah Salt Lake City, UT Degree B.S. in Bioengineering (2010) Institution University of Washington Seattle, WA Professional Appointments Institution Boston University\/Broad Institute Boston, MA\/Cambridge, MA Department Electrical and Computer Engineering Title Postdoctoral Researcher Period 2014 – Present Publications Journal Articles 2016 Nicholas Roehner et al., “Sharing […]<\/p>\n","protected":false},"author":12430,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/pages\/15"}],"collection":[{"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/users\/12430"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/comments?post=15"}],"version-history":[{"count":36,"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/pages\/15\/revisions"}],"predecessor-version":[{"id":144,"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/pages\/15\/revisions\/144"}],"wp:attachment":[{"href":"https:\/\/sites.bu.edu\/nroehner\/wp-json\/wp\/v2\/media?parent=15"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}