{"id":48,"date":"2017-11-16T20:12:38","date_gmt":"2017-11-17T01:12:38","guid":{"rendered":"https:\/\/sites.bu.edu\/davieslab\/?page_id=48"},"modified":"2021-07-26T11:52:47","modified_gmt":"2021-07-26T15:52:47","slug":"data-code","status":"publish","type":"page","link":"https:\/\/sites.bu.edu\/davieslab\/data-code\/","title":{"rendered":"Data & Code"},"content":{"rendered":"

Astrangia poculata<\/em> Transcriptome<\/a>
\n<\/strong>Assembled and annotated transcriptome for aposymbiotic adult <\/span>Astrangia poculata\u00a0<\/span><\/em>. Data were generated using Illumina HiSeq2500 1*50bp reads and assembled using Trinity.\u00a0
\nTranscriptome will be published in Wuitchik et al., in press. Stay tuned! <\/p>\n

Breviolum psygmophilum<\/em> Transcriptome<\/a><\/strong>
\nOculina arbuscula<\/em> Transcriptome<\/a><\/strong>
\n\"\"<\/p>\n

Oculina arbuscula<\/em> Sequence Stats<\/h6>\n
57470 sequences.<\/span>
\n1418 average length.<\/span>
\n32901 maximum length.<\/span>
\n500 minimum length.<\/span>
\nN50 = 1678<\/span>
\n81.5 Mb altogether (81494647 bp).<\/span>
\n0 ambiguous Mb. (0 bp, 0%)<\/span>
\n0 Mb of Ns. (0 bp, 0%)<\/span><\/h6>\n
Breviolum psygmophilum<\/em> Sequence Stats<\/h6>\n
31970 sequences.<\/span>
\n1291 average length.<\/span>
\n8436 maximum length.<\/span>
\n500 minimum length.<\/span>
\nN50 = 1458<\/span>
\n41.3 Mb altogether (41260850 bp).<\/span>
\n0 ambiguous Mb. (0 bp, 0%)<\/span>
\n0 Mb of Ns. (0 bp, 0%)<\/span><\/h6>\n

Assembled and annotated transcriptomes <\/span>Oculina arbuscula \u00a0<\/span><\/em>and its symbiotic dinoflagellate algae Breviolum psygmophilum<\/em>. Sequencing was performed by NovoGene on two lanes of an Illumina Novaseq 6000 sequencer as 150bp paired-end reads. Pipeline for generating\u00a0transcriptomes<\/a>.<\/span>
\nTranscriptomes will be published in Rivera et al., in prep. Stay tuned!<\/p>\n

Siderastrea siderea<\/em> Transcriptome<\/a>
\n<\/strong>Assembled and annotated transcriptome for the adult scleractinian coral\u00a0<\/span>Siderastrea siderea\u00a0<\/span><\/em>with symbiont contamination removed. Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.\u00a0
\n<\/a><\/em><\/span><\/span><\/p>\n

Please cite:\u00a0Davies et al 2016<\/a><\/p>\n

Cladocopium<\/em> Transcriptome<\/a><\/strong>
\nAssembled and annotated transcriptome for the symbiotic dinoflagellate algae Cladocopium<\/em>\u00a0hosted by\u00a0Siderastrea siderea\u00a0<\/span><\/em>with all host\u00a0contamination removed. Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.<\/p>\n

Please cite: Davies et al 2018<\/a><\/p>\n

Crepidula fornicata<\/em> previously published transcriptome and new annotation files<\/a><\/strong>
\nAnnotated transcriptome (gene and GO) for the Common Slipper Shell snail Crepidula fornicata<\/em>. Previously published 454 transcriptome was retrieved from the Henry Lab<\/a>, trimmed to include only contigs >500bp and annotated via GitHub<\/a>. \u200b<\/p>\n

Please cite: Kriefall et al 2018<\/a><\/p>\n

Crepidula fornicata<\/em> 2019 assembled transcriptome and annotation files<\/a><\/strong>
\nAnnotated transcriptome (gene and GO) for the Common Slipper Shell snail Crepidula fornicata<\/em> assembled from data from Reyes et al in press (2021).<\/p>\n

Please cite: Reyes CL, Benson BE, Levy M, Pires A, Pechenik JA and SW Davies<\/strong>. In press. The Marine Gastropod Crepidula fornicata<\/em> Remains Resilient to Ocean Acidification Across Two Life History Stages. Frontiers in Physiology biorxiv<\/a><\/p>\n

Clownfish transcriptome<\/a><\/strong>
\nAssembled and annotated transcriptome for the the clownfish Amphiprion percula<\/em> (Nemo). Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.<\/p>\n

Please cite: https:\/\/www.frontiersin.org\/articles\/10.3389\/fmars.2018.00284\/full<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

Astrangia poculata Transcriptome Assembled and annotated transcriptome for aposymbiotic adult Astrangia poculata\u00a0. Data were generated using Illumina HiSeq2500 1*50bp reads and assembled using Trinity.\u00a0 Transcriptome will be published in Wuitchik et al., in press. Stay tuned! Breviolum psygmophilum Transcriptome Oculina arbuscula Transcriptome Oculina arbuscula Sequence Stats 57470 sequences. 1418 average length. 32901 maximum length. 500 […]<\/p>\n","protected":false},"author":14193,"featured_media":0,"parent":0,"menu_order":9,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/pages\/48"}],"collection":[{"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/users\/14193"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/comments?post=48"}],"version-history":[{"count":39,"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/pages\/48\/revisions"}],"predecessor-version":[{"id":637,"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/pages\/48\/revisions\/637"}],"wp:attachment":[{"href":"https:\/\/sites.bu.edu\/davieslab\/wp-json\/wp\/v2\/media?parent=48"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}