{"id":362,"date":"2014-02-06T16:40:33","date_gmt":"2014-02-06T21:40:33","guid":{"rendered":"https:\/\/sites.bu.edu\/cnrlab\/?page_id=362"},"modified":"2014-02-06T16:51:59","modified_gmt":"2014-02-06T21:51:59","slug":"freesurfer-quality-control-step-2-add-control-points","status":"publish","type":"page","link":"https:\/\/sites.bu.edu\/cnrlab\/lab-resources\/freesurfer-quality-control-guide\/freesurfer-quality-control-step-2-add-control-points\/","title":{"rendered":"FreeSurfer Quality Control: Step 2: Add Control Points"},"content":{"rendered":"

Freesurfer Quality Control Guide<\/h1>\n

Step 2: Correct the White Matter surfaces to include<\/span> any missing white matter<\/h2>\n

Step 2a: Load the target subject into FreeView using the terminal:<\/h3>\n

You can also open FreeView with all the appropriate files preloaded using the following commands:<\/p>\n

export SUBJ=YourSubjectName<\/strong>\r\nfreeview \\\r\n-v $SUBJECTS_DIR\/$SUBJ\/mri\/orig.mgz \\\r\n-f $SUBJECTS_DIR\/$SUBJ\/surf\/lh.white:edgecolor='0,0,255' \\\r\n-f $SUBJECTS_DIR\/$SUBJ\/surf\/rh.white:edgecolor='0,0,255' &<\/pre>\n
Step 2b: -OR- Load the target subject into FreeView using the GUI:<\/h3>\n
In your terminal, open FreeView:<\/p>\n
freeview &<\/pre>\n
Load the following volume files for the subject you are editing:<\/p>\n
<\/p>\n