Publications
C. Madsen, P. Vaidyanathan, S. Sadraddini, C. Vasile, N. A. DeLateur, R. Weiss, D. Densmore, and C. Belta, “Metrics for Signal Temporal Logic Formulae,” IEEE Conference on Decision and Control (CDC), 2018 (under review).
[Bibtex]
@inproceedings{Madsen2018,
author = {Curtis Madsen and
Prashant Vaidyanathan and
Sadra Sadraddini and
Cristian-Ioan Vasile and
Nicholas A. DeLateur and
Ron Weiss and
Douglas Densmore and
Calin Belta},
title = {Metrics for Signal Temporal Logic Formulae},
booktitle = {IEEE Conference on Decision and Control (CDC)},
year = {2018}
}
N. Mehdipour, D. Briers, I. Haghighi, C. Glen, M. Kemp, and C. Belta, “Spatial-Temporal Pattern Synthesis in a Network of Locally Interacting Cells,” IEEE Conference on Decision and Control (CDC), 2018 (under review).
[Bibtex]
@inproceedings{Mehdipour2018,
author = {Noushin Mehdipour and
Demarcus Briers and
Iman Haghighi and
Chad Glen and
Melissa Kemp and
Calin Belta},
title = {Spatial-Temporal Pattern Synthesis in a Network of Locally Interacting Cells},
booktitle = {IEEE Conference on Decision and Control (CDC)},
year = {2018}
}
J. Wang and C. Belta, “The Effects of DNA Concentrations on the Adaptive Robustness of Network Topologies,” IEEE Conference on Decision and Control (CDC), 2018 (under review).
[Bibtex]
@inproceedings{Wang2018,
author = {Junmin Wang and
Calin Belta},
title = {The Effects of DNA Concentrations on the Adaptive Robustness of Network Topologies},
booktitle = {IEEE Conference on Decision and Control (CDC)},
year = {2018}
}
J. Wang, S. A. Isaacson, and C. Belta, “Modeling Genetic Circuit Behavior in Transiently Transfected Mammalian Cells,” ACS Synthetic Biology, 2018 (under review).
[Bibtex]
@article{Wang2018,
author = {Junmin Wang and
Samuel A. Isaacson and
Calin Belta},
title = {Modeling Genetic Circuit Behavior in Transiently Transfected Mammalian Cells},
journal = {ACS Synthetic Biology},
year = {2018}
}
C. Madsen, P. Vaidyanathan, N. A. DeLateur, E. Appleton, G. Frasco, C. Belta, R. Weiss, and D. Densmore, “Temporal Verification of Genetic Circuits,” International Workshop on Bio-Design Automation (IWBDA), 2018.
[Bibtex]
@inproceedings{Madsen2018,
author = {Curtis Madsen and
Prashant Vaidyanathan and
Nicholas A. DeLateur and
Evan Appleton and
Greg Frasco and
Calin Belta and
Ron Weiss and
Douglas Densmore},
title = {Temporal Verification of Genetic Circuits},
booktitle = {International Workshop on Bio-Design Automation (IWBDA)},
year = {2018}
}
S. Das, E. B. Steager, M. A. Hsieh, K. J. Stebe, and V. Kumar, “Experiments and Open-loop Control of Multiple Catalytic Microrobots,” Journal of Micro-Bio Robotics, vol. 14, no. 1, pp. 25-34, 2018.
[Bibtex]
@article{Das2018,
author = {Sambeeta Das and
Edward B. Steager and
M. Ani Hsieh and
Kathleen J. Stebe and
Vijay Kumar},
title = {Experiments and Open-loop Control of Multiple Catalytic Microrobots},
journal = {Journal of Micro-Bio Robotics},
volume = {14},
number = {1},
pages = {25--34},
doi = {10.1007/s12213-018-0106-1},
month = {Jun},
year = {2018}
}
E. E. Hunter, E. W. Brink, E. B. Steager, and V. Kumar, “Toward Soft Micro Bio Robots for Cellular and Chemical Delivery,” IEEE Robotics and Automation Letters, vol. 3, no. 3, pp. 1592-1599, 2018.
[Bibtex]
@article{Hunter2018,
author = {Elizabeth E. Hunter and
Evan W. Brink and
Edward B. Steager and
Vijay Kumar},
title = {Toward Soft Micro Bio Robots for Cellular and Chemical Delivery},
journal = {IEEE Robotics and Automation Letters},
volume={3},
number={3},
pages={1592--1599},
doi={10.1109/LRA.2018.2800118},
month={July},
year = {2018}
}
S. Das, E. E. Hunter, N. A. DeLateur, E. B. Steager, R. Weiss, and V. Kumar, “Controlled Delivery of Signaling Molecules using Magnetic Microrobots,” International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS), 2018.
[Bibtex]
@inproceedings{Das2018,
author = {Sambeeta Das and
Elizabeth E. Hunter and
Nicholas A. DeLateur and
Edward B. Steager and
Ron Weiss and
Vijay Kumar},
title = {Controlled Delivery of Signaling Molecules using Magnetic Microrobots},
booktitle = {International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS)},
year = {2018}
}
E. E. Hunter, E. W. Brink, E. B. Steager, and V. Kumar, “3D Micromolding of Small-Scale Biological Robots,” International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS), 2018.
[Bibtex]
@inproceedings{Hunter2018,
author = {Elizabeth E. Hunter and
Evan W. Brink and
Edward B. Steager and
Vijay Kumar},
title = {3D Micromolding of Small-Scale Biological Robots},
booktitle = {International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS)},
year = {2018}
}
D. E. Hernandez, S. W. Chen, E. B. Steager, E. E. Hunter, and V. Kumar, “Cell Tracking with Deep Learning and the Viterbi Algorithm,” International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS), 2018.
[Bibtex]
@inproceedings{Hernandez2018,
author = {David E. Hernandez and
Steven W. Chen and
Edward B. Steager and
Elizabeth E. Hunter and
Vijay Kumar},
title = {Cell Tracking with Deep Learning and the Viterbi Algorithm},
booktitle = {International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS)},
year = {2018}
}
L. Gaidukov, L. Wroblewska, B. Teague, T. Nelson, X. Zhang, Y. Liu, K. Jagtap, S. Mamo, W. A. Tseng, A. Lowe, J. Das, K. Bandara, S. Baijuraj, N. M. Summers, T. K. Lu, L. Zhang, and R. Weiss, “A multi-landing pad DNA integration platform for mammalian cell engineering,” Nucleic Acids Research, vol. 46, no. 8, pp. 4072-4086, 2018.
[Bibtex]
@article{Gaidukov2018,
author = {Leonid Gaidukov and
Liliana Wroblewska and
Brian Teague and
Tom Nelson and
Xin Zhang and
Yan Liu and
Kalpana Jagtap and
Selamawit Mamo and
Wen Allen Tseng and
Alexis Lowe and
Jishnu Das and
Kalpanie Bandara and
Swetha Baijuraj and
Nevin M. Summers and
Timothy K. Lu and
Lin Zhang and
Ron Weiss},
title = {A multi-landing pad DNA integration platform for mammalian cell engineering},
journal = {Nucleic Acids Research},
volume = {46},
number = {8},
pages = {4072--4086},
doi = {10.1093/nar/gky216},
year = {2018}
}
T. Kitada, B. DiAndreth, B. Teague, and R. Weiss, “Programming gene and engineered-cell therapies with synthetic biology,” Science, vol. 359, no. 6376, 2018.
[Bibtex]
@article{Kitada2018,
author = {Tasuku Kitada and
Breanna DiAndreth and
Brian Teague and
Ron Weiss},
title = {Programming gene and engineered-cell therapies with synthetic biology},
journal = {Science},
volume = {359},
number = {6376},
doi = {10.1126/science.aad1067},
publisher = {American Association for the Advancement of Science},
year = {2018}
}
D. Karig, K. M. Martini, T. Lu, N. A. DeLateur, N. Goldenfeld, and R. Weiss, “Stochastic Turing Patterns in a Synthetic Bacterial Population,” Proceedings of the National Academy of Sciences (PNAS), 2018.
[Bibtex]
@article{Karig2018,
author = {David Karig and
K. Michael Martini and
Ting Lu and
Nicholas A. DeLateur and
Nigel Goldenfeld and
Ron Weiss},
title = {Stochastic Turing Patterns in a Synthetic Bacterial Population},
journal = {Proceedings of the National Academy of Sciences (PNAS)},
doi = {10.1073/pnas.1720770115},
publisher = {National Academy of Sciences},
year = {2018}
}
G. Misirli, T. Nguyen, J. A. McLaughlin, P. Vaidyanathan, T. Jones, D. Densmore, C. J. Myers, and A. Wipat, “A Computational Workflow for the Automated Generation of Models of Genetic Designs,” ACS Synthetic Biology, 2018.
[Bibtex]
@article{Misirli2018,
author = {G{\"o}ksel M{\i}s{\i}rl{\i} and
Tramy Nguyen and
James Alastair McLaughlin and
Prashant Vaidyanathan and
Timothy Jones and
Douglas Densmore and
Chris J. Myers and
Anil Wipat},
title = {A Computational Workflow for the Automated Generation of Models of Genetic Designs},
journal = {ACS Synthetic Biology},
doi = {10.1021/acssynbio.7b00459},
year = {2018}
}
P. Vaidyanathan, R. Ivison, G. Bombara, N. A. DeLateur, R. Weiss, C. Belta, and D. Densmore, “Grid-Based Temporal Logic Inference,” IEEE Conference on Decision and Control (CDC), pp. 5354-5359, 2017.
[Bibtex]
@inproceedings{Vaidyanathan2017,
author = {Prashant Vaidyanathan and
Rachael Ivison and
Giuseppe Bombara and
Nicholas A. DeLateur and
Ron Weiss and
Calin Belta and
Douglas Densmore},
title = {Grid-Based Temporal Logic Inference},
booktitle = {IEEE Conference on Decision and Control (CDC)},
pages={5354--5359},
doi={10.1109/CDC.2017.8264452},
month={Dec},
year = {2017}
}
C. Madsen, E. Appleton, P. Vaidyanathan, R. Mardian, C. Vasile, K. Elkind, A. Bennett, F. Cao, M. Nagata, C. Belta, and D. Densmore, “Phoenix: A Systems Engineering Approach to Genetic Circuit Synthesis,” International Workshop on Bio-Design Automation (IWBDA), 2017.
[Bibtex]
@inproceedings{Madsen2017,
author = {Curtis Madsen and
Evan Appleton and
Prashant Vaidyanathan and
Rizki Mardian and
Cristian-Ioan Vasile and
Katherine Elkind and
Alexander Bennett and
Fan Cao and
Masakazu Nagata and
Calin Belta and
Douglas Densmore},
title = {Phoenix: A Systems Engineering Approach to Genetic Circuit Synthesis},
booktitle = {International Workshop on Bio-Design Automation (IWBDA)},
year = {2017}
}
J. Beal, N. DeLateur, B. Teague, R. Weiss, J. Sexton, S. Castillo-Hair, and J. J. Tabor, “Toward Quantitative Comparison of Fluorescent Protein Expression Levels via Fluorescent Beads,” International Workshop on Bio-Design Automation (IWBDA), 2017.
[Bibtex]
@inproceedings{Beal2017,
author = {Jacob Beal and
Nicholas DeLateur and
Brian Teague and
Ron Weiss and
John Sexton and
Sebasti\'{a}n Castillo-Hair and
Jeffrey J. Tabor},
title = {Toward Quantitative Comparison of Fluorescent Protein Expression Levels via Fluorescent Beads},
booktitle = {International Workshop on Bio-Design Automation (IWBDA)},
year = {2017}
}
E. B. Steager, D. Wong, J. Wang, S. Arora, and V. Kumar, “Control of Multiple Microrobots with Multiscale Magnetic Field Superposition,” International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS), pp. 1-6, 2017.
[Bibtex]
@inproceedings{Steager2017,
author = {Edward B. Steager and
Denise Wong and
Jeremy Wang and
Simran Arora and
Vijay Kumar},
title = {Control of Multiple Microrobots with Multiscale Magnetic Field Superposition},
booktitle = {International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS)},
pages={1--6},
doi={10.1109/MARSS.2017.8001927},
month={July},
year = {2017}
}
S. Das, E. B. Steager, K. J. Stebe, and V. Kumar, “Simultaneous Control of Spherical Microrobots Using Catalytic and Magnetic Actuation,” International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS), pp. 1-6, 2017.
[Bibtex]
@inproceedings{Das2017,
author = {Sambeeta Das and
Edward B. Steager and
Kathleen J. Stebe and
Vijay Kumar},
title = {Simultaneous Control of Spherical Microrobots Using Catalytic and Magnetic Actuation},
booktitle = {International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS)},
pages={1--6},
doi={10.1109/MARSS.2017.8001924},
month={July},
year = {2017}
}
I. Haghighi, K. Leahy, R. Ivision, and C. Belta, “Semi-supervised Pattern Synthesis in Spatially Distributed Dynamical Systems,” American Control Conference (ACC), pp. 2530-2535, 2017.
[Bibtex]
@inproceedings{Haghighi2017,
author = {Iman Haghighi and
Kevin Leahy and
Rachael Ivison and
Calin Belta},
title = {Semi-supervised Pattern Synthesis in Spatially Distributed Dynamical Systems},
booktitle = {American Control Conference (ACC)},
pages={2530--2535},
doi={10.23919/ACC.2017.7963333},
month={May},
year = {2017}
}
C. Madsen, P. Vaidyanathan, C. Vasile, R. Ivison, J. Wang, C. Belta, and D. Densmore, “Utilizing Signal Temporal Logic to Characterize and Compose Modules in Synthetic Biology,” International Workshop on Bio-Design Automation (IWBDA), 2016.
[Bibtex]
@inproceedings{Madsen2016,
author = {Curtis Madsen and
Prashant Vaidyanathan and
Cristian-Ioan Vasile and
Rachael Ivison and
Junmin Wang and
Calin Belta and
Douglas Densmore},
title = {Utilizing Signal Temporal Logic to Characterize and Compose Modules in Synthetic Biology},
booktitle = {International Workshop on Bio-Design Automation (IWBDA)},
year = {2016}
}
P. Vaidyanathan, E. Appleton, C. Madsen, C. Vasile, A. Pacheco, I. Haghighi, N. Roehner, R. Ivison, J. Wang, Y. Agarwal, Z. Chapasko, C. Belta, and D. Densmore, “Genetic Systems Engineering,” International Workshop on Bio-Design Automation (IWBDA), 2016.
[Bibtex]
@inproceedings{Vaidyanathan2016,
author = {Prashant Vaidyanathan and
Evan Appleton and
Curtis Madsen and
Cristian-Ioan Vasile and
Alan Pacheco and
Iman Haghighi and
Nicholas Roehner and
Rachael Ivison and
Junmin Wang and
Yash Agarwal and
Zachary Chapasko and
Calin Belta and
Douglas Densmore},
title = {Genetic Systems Engineering},
booktitle = {International Workshop on Bio-Design Automation (IWBDA)},
year = {2016}
}
B. P. Teague, P. Guye, and R. Weiss, “Synthetic Morphogenesis,” Cold Spring Harbor Perspectives in Biology, vol. 8, no. 9, 2016.
[Bibtex]
@article{Teague2016,
author = {Brian P. Teague and
Patrick Guye and
Ron Weiss},
title = {Synthetic Morphogenesis},
journal = {Cold Spring Harbor Perspectives in Biology},
volume = {8},
number = {9},
doi = {10.1101/cshperspect.a023929},
year = {2016}
}
D. Wong, I. B. Liu, E. B. Steager, K. J. Stebe, and V. Kumar, “Directed Micro Assembly of Passive Particles at Fluid Interfaces Using Magnetic Robots,” International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS), pp. 1-6, 2016.
[Bibtex]
@inproceedings{Wong2016,
author = {Denise Wong and
Iris B. Liu and
Edward B. Steager and
Kathleen J. Stebe and
Vijay Kumar},
title = {Directed Micro Assembly of Passive Particles at Fluid Interfaces Using Magnetic Robots},
booktitle = {International Conference on Manipulation, Automation, and Robotics at Small Scales (MARRS)},
pages={1--6},
doi={10.1109/MARSS.2016.7561747},
month = {July},
year = {2016}
}
D. Wong, E. B. Steager, and V. Kumar, “Independent Control of Identical Magnetic Robots in a Plane,” IEEE Robotics and Automation Letters, vol. 1, no. 1, pp. 554-561, 2016.
[Bibtex]
@article{Wong2016,
author = {Denise Wong and
Edward B. Steager and
Vijay Kumar},
title = {Independent Control of Identical Magnetic Robots in a Plane},
journal = {IEEE Robotics and Automation Letters},
volume={1},
number={1},
pages={554--561},
doi={10.1109/LRA.2016.2522999},
year = {2016}
}
E. E. Hunter, N. Chodosh, E. B. Steager and V. Kumar, “Control of Microstructures Propelled via Bacterial Baths,” IEEE International Conference on Robotics and Automation (ICRA), pp. 1693-1700, 2016.
[Bibtex]
@inproceedings{Hunter2016,
author = {Elizabeth E. Hunter and
Nathaniel Chodosh and
Edward B. Steager and
Vijay Kumar},
title = {Control of Microstructures Propelled via Bacterial Baths},
booktitle = {IEEE International Conference on Robotics and Automation (ICRA)},
pages={1693--1700},
doi={10.1109/ICRA.2016.7487311},
month = {May},
year = {2016}
}
E. Appleton, Y. Agarwal, Z. Chapasko, E. Oberortner, A. Pacheco, P. Vaidyanathan, N. Roehner, and D. Densmore, “Phoenix: An Automated Design-Build-Test Tool,” International Workshop on Bio-Design Automation (IWBDA), 2015.
[Bibtex]
@inproceedings{Appleton2015,
author = {Evan Appleton and
Yash Agarwal and
Zachary Chapasko and
Ernst Oberortner and
Alan Pacheco and
Prashant Vaidyanathan and
Nicholas Roehner and
Douglas Densmore},
title = {Phoenix: An Automated Design-Build-Test Tool},
booktitle = {International Workshop on Bio-Design Automation (IWBDA)},
year = {2015}
}
B. P. Teague and R. Weiss, “Synthetic communities, the sum of parts,” Science, vol. 349, no. 6251, pp. 924-925, 2015.
[Bibtex]
@article{Teague2015,
author = {Brian P. Teague and
Ron Weiss},
title = {Synthetic communities, the sum of parts},
journal = {Science},
volume = {349},
number = {6251},
pages = {924--925},
doi = {10.1126/science.aad0876},
publisher = {American Association for the Advancement of Science},
year = {2015}
}
