Data & Code

Astrangia poculata Transcriptome
Assembled and annotated transcriptome for aposymbiotic adult Astrangia poculata . Data were generated using Illumina HiSeq2500 1*50bp reads and assembled using Trinity. 
Transcriptome will be published in Wuitchik et al., in prep. Stay tuned!

Breviolum psygmophilum Transcriptome
Oculina arbuscula Transcriptome

Oculina arbuscula Sequence Stats
57470 sequences.
1418 average length.
32901 maximum length.
500 minimum length.
N50 = 1678
81.5 Mb altogether (81494647 bp).
0 ambiguous Mb. (0 bp, 0%)
0 Mb of Ns. (0 bp, 0%)
Breviolum psygmophilum Sequence Stats
31970 sequences.
1291 average length.
8436 maximum length.
500 minimum length.
N50 = 1458
41.3 Mb altogether (41260850 bp).
0 ambiguous Mb. (0 bp, 0%)
0 Mb of Ns. (0 bp, 0%)

Assembled and annotated transcriptomes Oculina arbuscula  and its symbiotic dinoflagellate algae Breviolum psygmophilum. Sequencing was performed by NovoGene on two lanes of an Illumina Novaseq 6000 sequencer as 150bp paired-end reads. Pipeline for generating transcriptomes.
Transcriptomes will be published in Rivera et al., in prep. Stay tuned!

Siderastrea siderea Transcriptome
Assembled and annotated transcriptome for the adult scleractinian coral Siderastrea siderea with symbiont contamination removed. Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity. 

Please cite: Davies SW, Marchetti A, Ries, JB and KD Castillo. 2016. Thermal and pCO2 stress elicit divergent transcriptomic responses in a resilient coral. Frontiers in Marine Science. FMARS-03-00112.

Cladocopium Transcriptome
Assembled and annotated transcriptome for the symbiotic dinoflagellate algae Cladocopium hosted by Siderastrea siderea with all host contamination removed. Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.

Please cite: Davies SW, Ries JB, Marchetti A, Castillo KD. 2018. Symbiodinium functional diversity in the coral Siderastrea siderea is influenced by thermal stress and reef environment, but not ocean acidification. Frontiers in Marine Science. FMARS-05-00150.

Crepidula fornicata previously published transcriptome and new annotation files
Annotated transcriptome (gene and GO) for the Common Slipper Shell snail Crepidula fornicata. Previously published 454 transcriptome was retrieved from the Henry Lab, trimmed to include only contigs >500bp and annotated via GitHub. ​

Please cite: Kriefall NG, Pires A, Pechenik JA and SW Davies (2018) Resilience of the Atlantic slippersnail Crepidula fornicata larvae in the face of coastal acidification. Frontiers in Marine Science 5:312.

Crepidula fornicata 2019 assembled transcriptome and annotation files
Annotated transcriptome (gene and GO) for the Common Slipper Shell snail Crepidula fornicata assembled from data from Reyes et al (in preparation).

Please cite: Reyes CL, Benson BE, Levy M, Pires A, Pechenik JA and SW Davies. In prep. Effects of ocean acidification on Crepidula fornicata physiology and gene expression across two life history stages.

Clownfish transcriptome
Assembled and annotated transcriptome for the the clownfish Amphiprion percula (Nemo). Data were generated using Illumina HiSeq2000 2*100bp reads and assembled using Trinity.

Please cite: Maytin A, Davies SW, Smith G, Mullen S and PM Buston (2018) De Novo transcriptome assembly of the Clown Anemonefish (Amphiprion percula): A new resource to study the evolution of fish color. Frontiers in Marine Science 5:284.